General Information of Drug Transporter (DT)
DT ID DTD0023 Transporter Info
Gene Name SLC22A5
Transporter Name Organic cation/carnitine transporter 2
Gene ID
6584
UniProt ID
O76082
Epigenetic Regulations of This DT (EGR)

Methylation

  Colon cancer

           1 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon 1

Hypermethylation of SLC22A5 in colon cancer [ 1 ]

Location

Promoter (-84 to +591, +1275 to 1492 bp)

Epigenetic Type

Methylation Experiment Method Methylation-specific PCR

Related Molecular Changes

Down regulation of SLC22A5 Experiment Method RT-qPCR

Studied Phenotype

Colon cancer [ ICD-11: 2B90]

Experimental Material

Human colon cancer cell line (LS174T)

Additional Notes

Hypermethylation within the OCTN2 promoter is responsible for the down-regulation of OCTN2 in HepG2.

  Hepatocellular carcinoma

           8 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon 1

Hypermethylation of SLC22A5 in hepatpcellular carcinoma [ 1 ]

Location

Promoter (-274 to -97, +1275 to +1492 bp)

Epigenetic Type

Methylation Experiment Method Methylation-specific PCR

Related Molecular Changes

Down regulation of SLC22A5 Experiment Method RT-qPCR

Studied Phenotype

Hepatocellular carcinoma [ ICD-11: 2C12.02]

Experimental Material

Human hepatocellular carcinoma cell line (HepG2)

Additional Notes

Hypermethylation within the OCTN2 promoter is responsible for the down-regulation of OCTN2 in HepG2.

  Epigenetic Phenomenon 2

Methylation of SLC22A5 in hepatocellular carcinoma [ 8 ]

Location

TSS1500 (cg06746492)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.57E+00 Statistic Test p-value: 2.05E-16; Z-score: -3.28E+00

Methylation in Case

4.76E-01 (Median) Methylation in Control 7.47E-01 (Median)

Studied Phenotype

Hepatocellular carcinoma [ ICD-11: 2C12.02]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 3

Methylation of SLC22A5 in hepatocellular carcinoma [ 8 ]

Location

TSS1500 (cg14196790)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.13E+00 Statistic Test p-value: 1.07E-02; Z-score: -3.77E-01

Methylation in Case

1.10E-01 (Median) Methylation in Control 1.24E-01 (Median)

Studied Phenotype

Hepatocellular carcinoma [ ICD-11: 2C12.02]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 4

Methylation of SLC22A5 in hepatocellular carcinoma [ 8 ]

Location

Body (cg17989736)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -2.05E+00 Statistic Test p-value: 5.49E-25; Z-score: -7.00E+00

Methylation in Case

3.59E-01 (Median) Methylation in Control 7.36E-01 (Median)

Studied Phenotype

Hepatocellular carcinoma [ ICD-11: 2C12.02]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 5

Methylation of SLC22A5 in hepatocellular carcinoma [ 8 ]

Location

Body (cg06588735)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.55E+00 Statistic Test p-value: 7.48E-15; Z-score: -4.28E+00

Methylation in Case

5.33E-01 (Median) Methylation in Control 8.28E-01 (Median)

Studied Phenotype

Hepatocellular carcinoma [ ICD-11: 2C12.02]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 6

Methylation of SLC22A5 in hepatocellular carcinoma [ 8 ]

Location

Body (cg24642933)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.26E+00 Statistic Test p-value: 1.55E-12; Z-score: -2.68E+00

Methylation in Case

4.73E-01 (Median) Methylation in Control 5.99E-01 (Median)

Studied Phenotype

Hepatocellular carcinoma [ ICD-11: 2C12.02]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 7

Methylation of SLC22A5 in hepatocellular carcinoma [ 8 ]

Location

Body (cg16647868)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.19E+00 Statistic Test p-value: 3.25E-06; Z-score: -1.01E+00

Methylation in Case

1.01E-01 (Median) Methylation in Control 1.21E-01 (Median)

Studied Phenotype

Hepatocellular carcinoma [ ICD-11: 2C12.02]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 8

Methylation of SLC22A5 in hepatocellular carcinoma [ 8 ]

Location

Body (cg12558347)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: 1.04E+00 Statistic Test p-value: 2.16E-02; Z-score: 3.56E-01

Methylation in Case

5.64E-01 (Median) Methylation in Control 5.42E-01 (Median)

Studied Phenotype

Hepatocellular carcinoma [ ICD-11: 2C12.02]

Experimental Material

Patient tissue samples

  Colon cancer

           3 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon 1

Methylation of SLC22A5 in colon adenocarcinoma [ 2 ]

Location

5'UTR (cg19918022)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.08E+00 Statistic Test p-value: 3.20E-04; Z-score: -2.78E+00

Methylation in Case

7.67E-01 (Median) Methylation in Control 8.31E-01 (Median)

Studied Phenotype

Colon cancer [ ICD-11: 2B90]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 2

Methylation of SLC22A5 in colon adenocarcinoma [ 2 ]

Location

1stExon (cg15668691)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.04E+00 Statistic Test p-value: 6.84E-04; Z-score: -1.38E+00

Methylation in Case

8.28E-01 (Median) Methylation in Control 8.59E-01 (Median)

Studied Phenotype

Colon cancer [ ICD-11: 2B90]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 3

Methylation of SLC22A5 in colon adenocarcinoma [ 2 ]

Location

Body (cg21803141)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.12E+00 Statistic Test p-value: 2.49E-05; Z-score: -2.53E+00

Methylation in Case

5.32E-01 (Median) Methylation in Control 5.96E-01 (Median)

Studied Phenotype

Colon cancer [ ICD-11: 2B90]

Experimental Material

Patient tissue samples

  Pancretic ductal adenocarcinoma

           1 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon 1

Methylation of SLC22A5 in pancretic ductal adenocarcinoma [ 3 ]

Location

5'UTR (cg10589249)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: 1.07E+00 Statistic Test p-value: 1.89E-05; Z-score: 3.48E-01

Methylation in Case

3.13E-02 (Median) Methylation in Control 2.92E-02 (Median)

Studied Phenotype

Pancretic ductal adenocarcinoma [ ICD-11: 2C10.0]

Experimental Material

Patient tissue samples

  Bladder cancer

           7 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon 1

Methylation of SLC22A5 in bladder cancer [ 4 ]

Location

TSS1500 (cg14196790)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.57E+00 Statistic Test p-value: 4.50E-02; Z-score: -1.72E+00

Methylation in Case

8.99E-02 (Median) Methylation in Control 1.41E-01 (Median)

Studied Phenotype

Bladder cancer [ ICD-11: 2C94]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 2

Methylation of SLC22A5 in bladder cancer [ 4 ]

Location

TSS200 (cg21911579)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.22E+00 Statistic Test p-value: 4.37E-02; Z-score: -1.34E+00

Methylation in Case

3.26E-02 (Median) Methylation in Control 3.99E-02 (Median)

Studied Phenotype

Bladder cancer [ ICD-11: 2C94]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 3

Methylation of SLC22A5 in bladder cancer [ 4 ]

Location

Body (cg19040266)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.63E+00 Statistic Test p-value: 1.06E-07; Z-score: -1.81E+01

Methylation in Case

2.88E-01 (Median) Methylation in Control 4.70E-01 (Median)

Studied Phenotype

Bladder cancer [ ICD-11: 2C94]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 4

Methylation of SLC22A5 in bladder cancer [ 4 ]

Location

Body (cg18104539)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.10E+00 Statistic Test p-value: 4.43E-06; Z-score: -7.34E+00

Methylation in Case

8.10E-01 (Median) Methylation in Control 8.94E-01 (Median)

Studied Phenotype

Bladder cancer [ ICD-11: 2C94]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 5

Methylation of SLC22A5 in bladder cancer [ 4 ]

Location

Body (cg23475112)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.01E+00 Statistic Test p-value: 2.02E-02; Z-score: -7.98E-01

Methylation in Case

9.58E-01 (Median) Methylation in Control 9.65E-01 (Median)

Studied Phenotype

Bladder cancer [ ICD-11: 2C94]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 6

Methylation of SLC22A5 in bladder cancer [ 4 ]

Location

Body (cg16647868)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.20E+00 Statistic Test p-value: 4.58E-02; Z-score: -1.13E+00

Methylation in Case

1.09E-01 (Median) Methylation in Control 1.30E-01 (Median)

Studied Phenotype

Bladder cancer [ ICD-11: 2C94]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 7

Methylation of SLC22A5 in bladder cancer [ 4 ]

Location

3'UTR (cg12481567)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.03E+00 Statistic Test p-value: 2.42E-02; Z-score: -2.29E+00

Methylation in Case

8.63E-01 (Median) Methylation in Control 8.85E-01 (Median)

Studied Phenotype

Bladder cancer [ ICD-11: 2C94]

Experimental Material

Patient tissue samples

  Renal cell carcinoma

           3 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon 1

Methylation of SLC22A5 in clear cell renal cell carcinoma [ 5 ]

Location

TSS1500 (cg06968155)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: 1.13E+00 Statistic Test p-value: 6.58E-05; Z-score: 1.21E+00

Methylation in Case

6.09E-02 (Median) Methylation in Control 5.38E-02 (Median)

Studied Phenotype

Renal cell carcinoma [ ICD-11: 2C90]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 2

Methylation of SLC22A5 in clear cell renal cell carcinoma [ 5 ]

Location

TSS1500 (cg14196790)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.39E+00 Statistic Test p-value: 4.34E-03; Z-score: -8.25E-01

Methylation in Case

7.03E-02 (Median) Methylation in Control 9.74E-02 (Median)

Studied Phenotype

Renal cell carcinoma [ ICD-11: 2C90]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 3

Methylation of SLC22A5 in clear cell renal cell carcinoma [ 5 ]

Location

Body (cg16647868)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: 1.13E+00 Statistic Test p-value: 1.81E-03; Z-score: 6.35E-01

Methylation in Case

7.79E-02 (Median) Methylation in Control 6.90E-02 (Median)

Studied Phenotype

Renal cell carcinoma [ ICD-11: 2C90]

Experimental Material

Patient tissue samples

  Colorectal cancer

           4 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon 1

Methylation of SLC22A5 in colorectal cancer [ 6 ]

Location

TSS1500 (cg07538946)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.32E+00 Statistic Test p-value: 2.20E-03; Z-score: -1.13E+00

Methylation in Case

2.63E-02 (Median) Methylation in Control 3.46E-02 (Median)

Studied Phenotype

Colorectal cancer [ ICD-11: 2B91]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 2

Methylation of SLC22A5 in colorectal cancer [ 6 ]

Location

TSS1500 (cg06968155)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: 1.08E+00 Statistic Test p-value: 2.24E-02; Z-score: 5.79E-01

Methylation in Case

1.67E-01 (Median) Methylation in Control 1.55E-01 (Median)

Studied Phenotype

Colorectal cancer [ ICD-11: 2B91]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 3

Methylation of SLC22A5 in colorectal cancer [ 6 ]

Location

Body (cg23475112)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.02E+00 Statistic Test p-value: 4.83E-05; Z-score: -1.49E+00

Methylation in Case

9.36E-01 (Median) Methylation in Control 9.56E-01 (Median)

Studied Phenotype

Colorectal cancer [ ICD-11: 2B91]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 4

Methylation of SLC22A5 in colorectal cancer [ 6 ]

Location

Body (cg12558347)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: 1.13E+00 Statistic Test p-value: 5.04E-03; Z-score: 6.82E-01

Methylation in Case

6.07E-01 (Median) Methylation in Control 5.39E-01 (Median)

Studied Phenotype

Colorectal cancer [ ICD-11: 2B91]

Experimental Material

Patient tissue samples

  Depression

           3 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon 1

Methylation of SLC22A5 in depression [ 7 ]

Location

TSS1500 (cg06968155)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: 1.04E+00 Statistic Test p-value: 3.40E-02; Z-score: 4.55E-01

Methylation in Case

8.75E-02 (Median) Methylation in Control 8.40E-02 (Median)

Studied Phenotype

Depression [ ICD-11: 6A8Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 2

Methylation of SLC22A5 in depression [ 7 ]

Location

TSS200 (cg24060327)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: 1.06E+00 Statistic Test p-value: 4.46E-02; Z-score: 3.98E-01

Methylation in Case

5.77E-02 (Median) Methylation in Control 5.43E-02 (Median)

Studied Phenotype

Depression [ ICD-11: 6A8Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 3

Methylation of SLC22A5 in depression [ 7 ]

Location

Body (cg12558347)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: 1.01E+00 Statistic Test p-value: 2.88E-02; Z-score: 3.11E-01

Methylation in Case

7.72E-01 (Median) Methylation in Control 7.64E-01 (Median)

Studied Phenotype

Depression [ ICD-11: 6A8Z]

Experimental Material

Patient tissue samples

  HIV infection

           5 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon 1

Methylation of SLC22A5 in HIV infection [ 9 ]

Location

TSS1500 (cg07538946)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: 1.50E+00 Statistic Test p-value: 8.81E-06; Z-score: 1.76E+00

Methylation in Case

3.12E-02 (Median) Methylation in Control 2.08E-02 (Median)

Studied Phenotype

HIV infection [ ICD-11: 1C62.Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 2

Methylation of SLC22A5 in HIV infection [ 9 ]

Location

TSS1500 (cg14196790)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: 1.28E+00 Statistic Test p-value: 1.98E-03; Z-score: 1.27E+00

Methylation in Case

1.68E-01 (Median) Methylation in Control 1.31E-01 (Median)

Studied Phenotype

HIV infection [ ICD-11: 1C62.Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 3

Methylation of SLC22A5 in HIV infection [ 9 ]

Location

TSS1500 (cg21948465)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: 1.35E+00 Statistic Test p-value: 2.38E-02; Z-score: 3.86E-01

Methylation in Case

2.06E-02 (Median) Methylation in Control 1.53E-02 (Median)

Studied Phenotype

HIV infection [ ICD-11: 1C62.Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 4

Methylation of SLC22A5 in HIV infection [ 9 ]

Location

Body (cg12558347)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: 1.04E+00 Statistic Test p-value: 1.04E-08; Z-score: 1.34E+00

Methylation in Case

8.99E-01 (Median) Methylation in Control 8.62E-01 (Median)

Studied Phenotype

HIV infection [ ICD-11: 1C62.Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 5

Methylation of SLC22A5 in HIV infection [ 9 ]

Location

Body (cg16647868)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: 1.10E+00 Statistic Test p-value: 3.69E-02; Z-score: 6.04E-01

Methylation in Case

1.36E-01 (Median) Methylation in Control 1.23E-01 (Median)

Studied Phenotype

HIV infection [ ICD-11: 1C62.Z]

Experimental Material

Patient tissue samples

  Lung adenocarcinoma

           4 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon 1

Methylation of SLC22A5 in lung adenocarcinoma [ 10 ]

Location

TSS1500 (cg14196790)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.34E+00 Statistic Test p-value: 6.87E-03; Z-score: -1.28E+00

Methylation in Case

2.03E-01 (Median) Methylation in Control 2.72E-01 (Median)

Studied Phenotype

Lung adenocarcinoma [ ICD-11: 2C25.0]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 2

Methylation of SLC22A5 in lung adenocarcinoma [ 10 ]

Location

TSS1500 (cg07538946)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.30E+00 Statistic Test p-value: 1.11E-02; Z-score: -1.92E+00

Methylation in Case

4.30E-02 (Median) Methylation in Control 5.59E-02 (Median)

Studied Phenotype

Lung adenocarcinoma [ ICD-11: 2C25.0]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 3

Methylation of SLC22A5 in lung adenocarcinoma [ 10 ]

Location

Body (cg12558347)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: 1.37E+00 Statistic Test p-value: 1.24E-03; Z-score: 4.01E+00

Methylation in Case

5.97E-01 (Median) Methylation in Control 4.37E-01 (Median)

Studied Phenotype

Lung adenocarcinoma [ ICD-11: 2C25.0]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 4

Methylation of SLC22A5 in lung adenocarcinoma [ 10 ]

Location

Body (cg19040266)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: 1.16E+00 Statistic Test p-value: 2.24E-02; Z-score: 1.65E+00

Methylation in Case

5.92E-01 (Median) Methylation in Control 5.12E-01 (Median)

Studied Phenotype

Lung adenocarcinoma [ ICD-11: 2C25.0]

Experimental Material

Patient tissue samples

  Panic disorder

           2 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon 1

Methylation of SLC22A5 in panic disorder [ 11 ]

Location

TSS1500 (cg21948465)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: 9.69E-01 Statistic Test p-value: 3.55E-02; Z-score: 4.52E-01

Methylation in Case

-4.12E+00 (Median) Methylation in Control -4.25E+00 (Median)

Studied Phenotype

Panic disorder [ ICD-11: 6B01]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 2

Methylation of SLC22A5 in panic disorder [ 11 ]

Location

TSS200 (cg24060327)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: 9.94E-01 Statistic Test p-value: 4.49E-02; Z-score: 1.51E-01

Methylation in Case

-5.39E+00 (Median) Methylation in Control -5.43E+00 (Median)

Studied Phenotype

Panic disorder [ ICD-11: 6B01]

Experimental Material

Patient tissue samples

  Papillary thyroid cancer

           4 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon 1

Methylation of SLC22A5 in papillary thyroid cancer [ 12 ]

Location

TSS1500 (cg07538946)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.09E+00 Statistic Test p-value: 3.27E-03; Z-score: -5.31E-01

Methylation in Case

5.75E-02 (Median) Methylation in Control 6.24E-02 (Median)

Studied Phenotype

Papillary thyroid cancer [ ICD-11: 2D10.1]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 2

Methylation of SLC22A5 in papillary thyroid cancer [ 12 ]

Location

Body (cg19040266)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.21E+00 Statistic Test p-value: 2.23E-16; Z-score: -3.04E+00

Methylation in Case

5.87E-01 (Median) Methylation in Control 7.08E-01 (Median)

Studied Phenotype

Papillary thyroid cancer [ ICD-11: 2D10.1]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 3

Methylation of SLC22A5 in papillary thyroid cancer [ 12 ]

Location

Body (cg23475112)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.01E+00 Statistic Test p-value: 1.82E-05; Z-score: -1.03E+00

Methylation in Case

9.34E-01 (Median) Methylation in Control 9.44E-01 (Median)

Studied Phenotype

Papillary thyroid cancer [ ICD-11: 2D10.1]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 4

Methylation of SLC22A5 in papillary thyroid cancer [ 12 ]

Location

3'UTR (cg12481567)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.01E+00 Statistic Test p-value: 2.31E-05; Z-score: -9.23E-01

Methylation in Case

9.33E-01 (Median) Methylation in Control 9.46E-01 (Median)

Studied Phenotype

Papillary thyroid cancer [ ICD-11: 2D10.1]

Experimental Material

Patient tissue samples

  Prostate cancer

           3 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon 1

Methylation of SLC22A5 in prostate cancer [ 13 ]

Location

TSS1500 (cg00748432)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: 1.19E+00 Statistic Test p-value: 3.74E-02; Z-score: 1.68E+00

Methylation in Case

8.16E-01 (Median) Methylation in Control 6.88E-01 (Median)

Studied Phenotype

Prostate cancer [ ICD-11: 2C82]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 2

Methylation of SLC22A5 in prostate cancer [ 13 ]

Location

Body (cg20706711)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: 1.16E+00 Statistic Test p-value: 1.90E-02; Z-score: 2.81E+00

Methylation in Case

8.60E-01 (Median) Methylation in Control 7.39E-01 (Median)

Studied Phenotype

Prostate cancer [ ICD-11: 2C82]

Experimental Material

Patient tissue samples

  Systemic lupus erythematosus

           4 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon 1

Methylation of SLC22A5 in systemic lupus erythematosus [ 14 ]

Location

TSS1500 (cg14196790)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: 1.16E+00 Statistic Test p-value: 4.85E-02; Z-score: 3.08E-01

Methylation in Case

2.51E-01 (Median) Methylation in Control 2.16E-01 (Median)

Studied Phenotype

Systemic lupus erythematosus [ ICD-11: 4A40.0]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 2

Methylation of SLC22A5 in systemic lupus erythematosus [ 14 ]

Location

TSS200 (cg21911579)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: 1.05E+00 Statistic Test p-value: 1.53E-02; Z-score: 1.78E-01

Methylation in Case

3.72E-02 (Median) Methylation in Control 3.55E-02 (Median)

Studied Phenotype

Systemic lupus erythematosus [ ICD-11: 4A40.0]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 3

Methylation of SLC22A5 in systemic lupus erythematosus [ 14 ]

Location

1stExon (cg20453264)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.02E+00 Statistic Test p-value: 5.45E-03; Z-score: -8.28E-02

Methylation in Case

8.06E-02 (Median) Methylation in Control 8.19E-02 (Median)

Studied Phenotype

Systemic lupus erythematosus [ ICD-11: 4A40.0]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 4

Methylation of SLC22A5 in systemic lupus erythematosus [ 14 ]

Location

Body (cg12558347)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.01E+00 Statistic Test p-value: 4.26E-02; Z-score: -2.85E-01

Methylation in Case

9.01E-01 (Median) Methylation in Control 9.07E-01 (Median)

Studied Phenotype

Systemic lupus erythematosus [ ICD-11: 4A40.0]

Experimental Material

Patient tissue samples

  Atypical teratoid rhabdoid tumor

           3 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon 1

Methylation of SLC22A5 in atypical teratoid rhabdoid tumor [ 15 ]

Location

1stExon (cg20453264)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: 2.02E+00 Statistic Test p-value: 4.70E-17; Z-score: 2.80E+00

Methylation in Case

7.25E-01 (Median) Methylation in Control 3.59E-01 (Median)

Studied Phenotype

Atypical teratoid rhabdoid tumor [ ICD-11: 2A00.1Y]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 2

Methylation of SLC22A5 in atypical teratoid rhabdoid tumor [ 15 ]

Location

Body (cg12558347)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.28E+00 Statistic Test p-value: 2.80E-02; Z-score: -8.21E-01

Methylation in Case

7.53E-02 (Median) Methylation in Control 9.65E-02 (Median)

Studied Phenotype

Atypical teratoid rhabdoid tumor [ ICD-11: 2A00.1Y]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 3

Methylation of SLC22A5 in atypical teratoid rhabdoid tumor [ 15 ]

Location

3'UTR (cg12481567)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.13E+00 Statistic Test p-value: 1.49E-11; Z-score: -2.16E+00

Methylation in Case

7.52E-01 (Median) Methylation in Control 8.51E-01 (Median)

Studied Phenotype

Atypical teratoid rhabdoid tumor [ ICD-11: 2A00.1Y]

Experimental Material

Patient tissue samples

  Breast cancer

           3 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon 1

Methylation of SLC22A5 in breast cancer [ 16 ]

Location

Body (cg12558347)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: 1.85E+00 Statistic Test p-value: 1.92E-11; Z-score: 2.72E+00

Methylation in Case

3.99E-01 (Median) Methylation in Control 2.15E-01 (Median)

Studied Phenotype

Breast cancer [ ICD-11: 2C60-2C6Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 2

Methylation of SLC22A5 in breast cancer [ 16 ]

Location

Body (cg23475112)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.13E+00 Statistic Test p-value: 5.17E-09; Z-score: -2.39E+00

Methylation in Case

8.45E-01 (Median) Methylation in Control 9.51E-01 (Median)

Studied Phenotype

Breast cancer [ ICD-11: 2C60-2C6Z]

Experimental Material

Patient tissue samples

  Epigenetic Phenomenon 3

Methylation of SLC22A5 in breast cancer [ 16 ]

Location

Body (cg18104539)

Epigenetic Type

Methylation Experiment Method Infinium HumanMethylation450 BeadChip

Methylation Fold Change

Fold Change: -1.03E+00 Statistic Test p-value: 5.52E-04; Z-score: -7.61E-01

Methylation in Case

8.69E-01 (Median) Methylation in Control 8.96E-01 (Median)

Studied Phenotype

Breast cancer [ ICD-11: 2C60-2C6Z]

Experimental Material

Patient tissue samples

  Asthma

           2 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon 1

Hypermethylation of SLC22A5 in asthma [ 17 ]

Location

Promoter

Epigenetic Type

Methylation Experiment Method Bisulfite pyrosequencing

Studied Phenotype

Asthma [ ICD-11: CA23]

Experimental Material

Patient tissue samples

Additional Notes

Genotype influences DNA methylation levels at the SLC22A5 gene promoter region in LCLs.

  Multilayered rosettes embryonal tumour

           1 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon 1

Moderate hypermethylation of SLC22A5 in multilayered rosettes embryonal tumour than that in healthy individual

Studied Phenotype

Multilayered rosettes embryonal tumour [ICD-11:2A00.1]

The Methylation Level of Disease Section Compare with the Healthy Individual

p-value: 1.03E-15; Fold-change: 0.262467257; Z-score: 6.744378667
DT methylation level in the diseased tissue of patients
DT methylation level in the normal tissue of healthy individuals
Please Click the above Thumbnail to View/Download
the Methylation Barchart for All Samples

microRNA

  Unclear Phenotype

           3 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon 1

miR-124 directly targets SLC22A5 [ 18 ]

Epigenetic Type

microRNA Experiment Method Microarray

miRNA Stemloop ID

miR-124 miRNA Mature ID miR-124-3p

miRNA Sequence

UAAGGCACGCGGUGAAUGCCAA

miRNA Target Type

Direct

Experimental Material

Human cervical cancer cell line (Hela)

  Epigenetic Phenomenon 2

miR-148b directly targets SLC22A5 [ 19 ]

Epigenetic Type

microRNA Experiment Method Microarray

miRNA Stemloop ID

miR-148b miRNA Mature ID miR-148b-3p

miRNA Sequence

UCAGUGCAUCACAGAACUUUGU

miRNA Target Type

Direct

Experimental Material

Human cervical cancer cell line (Hela)

  Epigenetic Phenomenon 3

miR-9 directly targets SLC22A5 [ 19 ]

Epigenetic Type

microRNA Experiment Method Microarray

miRNA Stemloop ID

miR-9 miRNA Mature ID miR-9-5p

miRNA Sequence

UCUUUGGUUAUCUAGCUGUAUGA

miRNA Target Type

Direct

Experimental Material

Human cervical cancer cell line (Hela)
References
1 Different involvement of promoter methylation in the expression of organic cation/carnitine transporter 2 (OCTN2) in cancer cell lines. PLoS One. 2013 Oct 16;8(10):e76474.
2 Genome-scale analysis of DNA methylation in colorectal cancer using Infinium HumanMethylation450 BeadChips. Epigenetics. 2013 Sep;8(9):921-34.
3 Genome-wide DNA methylation patterns in pancreatic ductal adenocarcinoma reveal epigenetic deregulation of SLIT-ROBO, ITGA2 and MET signaling. Int J Cancer. 2014 Sep 1;135(5):1110-8.
4 DNA Methylation Dynamics in Urological Tumors.
5 A CpG-methylation-based assay to predict survival in clear cell renal cell carcinoma. Nat Commun. 2015 Oct 30;6:8699.
6 Differences in DNA methylation signatures reveal multiple pathways of progression from adenoma to colorectal cancer. Gastroenterology. 2014 Aug;147(2):418-29.e8.
7 DNA methylation and inflammation marker profiles associated with a history of depression. Hum Mol Genet. 2018 Aug 15;27(16):2840-2850.
8 Exploring genome-wide DNA methylation profiles altered in hepatocellular carcinoma using Infinium HumanMethylation 450 BeadChips. Epigenetics. 2013 Jan;8(1):34-43.
9 HIV-1 Infection Accelerates Age According to the Epigenetic Clock. J Infect Dis. 2015 Nov 15;212(10):1563-73.
10 DNA methylation analysis of lung adenocarcinoma and adjacent non-tumor tissues
11 DNA Methylation signatures in panic disorder. Transl Psychiatry. 2017 Dec 18;7(12):1287.
12 Prognostic Classifier Based on Genome-Wide DNA Methylation Profiling in Well-Differentiated Thyroid Tumors. J Clin Endocrinol Metab. 2017 Nov 1;102(11):4089-4099.
13 Reducing the risk of false discovery enabling identification of biologically significant genome-wide methylation status using the HumanMethylation450 array. BMC Genomics. 2014 Jan 22;15:51.
14 Genome-wide DNA methylation analysis of systemic lupus erythematosus reveals persistent hypomethylation of interferon genes and compositional changes to CD4+ T-cell populations. PLoS Genet. 2013;9(8):e1003678.
15 Atypical Teratoid/Rhabdoid Tumors Are Comprised of Three Epigenetic Subgroups with Distinct Enhancer Landscapes. Cancer Cell. 2016 Mar 14;29(3):379-393.
16 Genome-wide Scan for Methylation Profiles in Breast Cancer
17 Local genotype influences DNA methylation at two asthma-associated regions, 5q31 and 17q21, in a founder effect population. J Med Genet. 2016 Apr;53(4):232-41.
18 The impact of microRNAs on protein output. Nature. 2008 Sep 4;455(7209):64-71.
19 MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Mol Cell. 2007 Jul 6;27(1):91-105.

If you find any error in data or bug in web service, please kindly report it to Dr. Yin and Dr. Li.