Modelled Stucture
Method: Homology modeling
Teplate PDB: 4YBQ_A
Identity: 81.312%
Minimized Score: -1280.522
Detail: Structure Info
Detail Information of Inter-species Structural Difference
| General Information of Drug Transporter (DT) | |||||
|---|---|---|---|---|---|
| DT ID | DTD0263 Transporter Info | ||||
| Gene Name | SLC2A5 | ||||
| Protein Name | Glucose transporter type 5, small intestine | ||||
| Gene ID | |||||
| UniProt ID | |||||
| 3D Structure |
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| Inter-species Structural Differences (ISD) | |||||
| Mus musculus (Mouse) | |||||
| Gene Name | Slc2a5 | ||||
| UniProt ID | |||||
| UniProt Entry | |||||
| 3D Structure |
Method: Homology modeling Teplate PDB: 4YBQ_A Sequence Length: 501 Identity: 89.442% |
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| Click to Save PDB File in TXT Format | |||||
| Performance | Minimized Score | -1320.06 kcal/mol | |||
| Ramachandra Favored |
Medium |
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| QMEANBrane Quality |
High |
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| Ramachandran Plot |
Ramz Z Score: -0.8 ± 0.33 Residues in Favored Region: 488 Ramachandran favored: 97.80% Number of Outliers: 1 Ramachandran outliers: 0.20% |
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Local Quality |
QMEANBrane Score: 0.8 |
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| Click to Save Local Quality Plot in PNG Format | |||||
| Inter-species Structural Differences (ISD) | |||||
| Rattus norvegicus (Rat) | |||||
| Gene Name | Slc2a5 | ||||
| UniProt ID | |||||
| UniProt Entry | |||||
| 3D Structure |
Method: Homology modeling Teplate PDB: 4YBQ_A Sequence Length: 502 Identity: 99.801% |
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| Click to Save PDB File in TXT Format | |||||
| Performance | Minimized Score | -1293.668 kcal/mol | |||
| Ramachandra Favored |
Excellent |
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| QMEANBrane Quality |
High |
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| Ramachandran Plot |
Ramz Z Score: -0.57 ± 0.34 Residues in Favored Region: 491 Ramachandran favored: 98.20% Number of Outliers: 1 Ramachandran outliers: 0.20% |
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Local Quality |
QMEANBrane Score: 0.8 |
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| Click to Save Local Quality Plot in PNG Format | |||||
| Experimental Structures of This Model Oganism | |||||
| PDB ID | Scanning Method | Resolution | Expression System | Details | Ref |
| 4YBQ | X-ray | 3.27 Å | Saccharomyces cerevisiae,?Brevibacillus choshinensis | [ 1] | |
| Structure | |||||
| Click to Save PDB File in TXT Format | |||||
| Corresponding chain | A/B | ||||
| Sequence Length | 1-502 | Mutation | Yes | ||
| Inter-species Structural Differences (ISD) | |||||
| Oryctolagus cuniculus (Rabbit) | |||||
| Gene Name | SLC2A5 | ||||
| UniProt ID | |||||
| UniProt Entry | |||||
| 3D Structure |
Method: Homology modeling Teplate PDB: 4YBQ_A Sequence Length: 486 Identity: 67.197% |
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| Click to Save PDB File in TXT Format | |||||
| Performance | Minimized Score | -944.334 kcal/mol | |||
| Ramachandra Favored |
Medium |
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| QMEANBrane Quality |
High |
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| Ramachandran Plot |
Ramz Z Score: -1.81 ± 0.33 Residues in Favored Region: 460 Ramachandran favored: 95.04% Number of Outliers: 3 Ramachandran outliers: 0.62% |
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Local Quality |
QMEANBrane Score: 0.8 |
||||
| Click to Save Local Quality Plot in PNG Format | |||||
| References | |||||
| 1 | Structure and mechanism of the mammalian fructose transporter GLUT5. Nature. 2015 Oct 15;526(7573):397-401. | ||||
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