Detail Information of Inter-species Structural Difference

General Information of Drug Transporter (DT)
DT ID DTD0439 Transporter Info
Gene Name SLC65A2
Protein Name Niemann-Pick C1-like protein 1
Gene ID
29881
UniProt ID
Q9UHC9
3D Structure

Modelled Stucture

Method: Homology modeling

Teplate PDB: 6V3F_A

Identity: 76.361%

Minimized Score: -3191.503

Detail: Structure Info

Inter-species Structural Differences (ISD)
Mus musculus (Mouse)
        Gene Name Npc1l1
        UniProt ID
Q6T3U4
        UniProt Entry
NPCL1_MOUSE
        3D Structure

Method: Homology modeling

Teplate PDB: 6V3F_A

Sequence Length: 1313

Identity: 91.318%

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        Performance Minimized Score -3285.677 kcal/mol
Ramachandra Favored

Medium
QMEANBrane Quality

Medium
        Ramachandran Plot

Ramz Z Score: -0.29 ± 0.22

Residues in Favored Region: 1276

Ramachandran favored: 97.33%

Number of Outliers: 6

Ramachandran outliers: 0.46%
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        Local Quality

QMEANBrane Score: 0.78
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Inter-species Structural Differences (ISD)
Rattus norvegicus (Rat)
        Gene Name Npc1l1
        UniProt ID
Q6T3U3
        UniProt Entry
NPCL1_RAT
        3D Structure

Crystallisation Method: EM

Expression System: Homo sapiens,?Mus musculus

PDB ID: 6V3H

Corresponding Chain: A

Sequence Length: 21-1331
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        Experimental Structures of This Model Oganism
                PDB ID Scanning Method Resolution Expression System Details Ref
                6V3F EM 3.7 Å Homo sapiens,?Mus musculus
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[ 1]
Structure
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Corresponding chain A
Sequence Length 21-1331 Mutation No
References
1 RCSB PDB: Cryo-EM structures of NPC1L1 reveal mechanisms of cholesterol transport and ezetimibe inhibition.

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