Modelled Stucture
Method: Homology modeling
Teplate PDB: 6BV7_A; 3US9_A
Identity: 72.093% ; 64.483%
Minimized Score: -553.566
Detail: Structure Info
General Information of Drug Transporter (DT) | |||||
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DT ID | DTD0479 Transporter Info | ||||
Gene Name | SLC8A3 | ||||
Protein Name | Sodium/calcium exchanger 3 | ||||
Gene ID | |||||
UniProt ID | |||||
3D Structure |
Modelled Stucture Method: Homology modeling Teplate PDB: 6BV7_A; 3US9_A Identity: 72.093% ; 64.483% Minimized Score: -553.566 Detail: Structure Info |
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Inter-species Structural Differences (ISD) | |||||
Mus musculus (Mouse) | |||||
Gene Name | Slc8a3 | ||||
UniProt ID | |||||
UniProt Entry | |||||
3D Structure |
Method: Homology modeling Teplate PDB: 3US9_A Sequence Length: 287 Identity: 66.782% |
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Click to Save PDB File in TXT Format | |||||
Performance | Minimized Score | -672.844 kcal/mol | |||
Ramachandra Favored |
Medium |
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QMEANBrane Quality |
Medium |
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Ramachandran Plot |
Ramz Z Score: -0.18 ± 0.46 Residues in Favored Region: 277 Ramachandran favored: 97.19% Number of Outliers: 4 Ramachandran outliers: 1.40% |
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Click to Save Ramachandran Plot in PNG Format | |||||
Local Quality |
QMEANBrane Score: 0.77 |
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Click to Save Local Quality Plot in PNG Format | |||||
Experimental Structures of This Model Oganism | |||||
PDB ID | Scanning Method | Resolution | Expression System | Details | Ref |
2LT9 | NMR | N.A. | Escherichia coli | [ 1] | |
Structure | |||||
Click to Save PDB File in TXT Format | |||||
Corresponding chain | A | ||||
Sequence Length | 528-682 | Mutation | No | ||
Rattus norvegicus (Rat) | |||||
Gene Name | Slc8a3 | ||||
UniProt ID | |||||
UniProt Entry | |||||
3D Structure |
Method: Homology modeling Teplate PDB: 3US9_A Sequence Length: 286 Identity: 65.744% |
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Click to Save PDB File in TXT Format | |||||
Performance | Minimized Score | -702.096 kcal/mol | |||
Ramachandra Favored |
Medium |
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QMEANBrane Quality |
Medium |
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Ramachandran Plot |
Ramz Z Score: 0.31 ± 0.5 Residues in Favored Region: 275 Ramachandran favored: 96.83% Number of Outliers: 2 Ramachandran outliers: 0.70% |
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Click to Save Ramachandran Plot in PNG Format | |||||
Local Quality |
QMEANBrane Score: 0.77 |
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Click to Save Local Quality Plot in PNG Format | |||||
References | |||||
1 | NMR structure note: solution structure of Ca2? binding domain 2B of the third isoform of the Na?/Ca2? exchanger. J Biomol NMR. 2012 Sep;54(1):115-21. | ||||
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