Modelled Stucture
Method: Homology modeling
Teplate PDB: 6BV7_A; 3US9_A
Identity: 72.093% ; 64.483%
Minimized Score: -553.566
Detail: Structure Info
Detail Information of Inter-species Structural Difference
| General Information of Drug Transporter (DT) | |||||
|---|---|---|---|---|---|
| DT ID | DTD0479 Transporter Info | ||||
| Gene Name | SLC8A3 | ||||
| Protein Name | Sodium/calcium exchanger 3 | ||||
| Gene ID | |||||
| UniProt ID | |||||
| 3D Structure |
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| Inter-species Structural Differences (ISD) | |||||
| Mus musculus (Mouse) | |||||
| Gene Name | Slc8a3 | ||||
| UniProt ID | |||||
| UniProt Entry | |||||
| 3D Structure |
Method: Homology modeling Teplate PDB: 3US9_A Sequence Length: 287 Identity: 66.782% |
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| Click to Save PDB File in TXT Format | |||||
| Performance | Minimized Score | -672.844 kcal/mol | |||
| Ramachandra Favored |
Medium |
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| QMEANBrane Quality |
Medium |
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| Ramachandran Plot |
Ramz Z Score: -0.18 ± 0.46 Residues in Favored Region: 277 Ramachandran favored: 97.19% Number of Outliers: 4 Ramachandran outliers: 1.40% |
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Local Quality |
QMEANBrane Score: 0.77 |
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| Click to Save Local Quality Plot in PNG Format | |||||
| Experimental Structures of This Model Oganism | |||||
| PDB ID | Scanning Method | Resolution | Expression System | Details | Ref |
| 2LT9 | NMR | N.A. | Escherichia coli | [ 1] | |
| Structure | |||||
| Click to Save PDB File in TXT Format | |||||
| Corresponding chain | A | ||||
| Sequence Length | 528-682 | Mutation | No | ||
| Inter-species Structural Differences (ISD) | |||||
| Rattus norvegicus (Rat) | |||||
| Gene Name | Slc8a3 | ||||
| UniProt ID | |||||
| UniProt Entry | |||||
| 3D Structure |
Method: Homology modeling Teplate PDB: 3US9_A Sequence Length: 286 Identity: 65.744% |
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| Click to Save PDB File in TXT Format | |||||
| Performance | Minimized Score | -702.096 kcal/mol | |||
| Ramachandra Favored |
Medium |
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| QMEANBrane Quality |
Medium |
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| Ramachandran Plot |
Ramz Z Score: 0.31 ± 0.5 Residues in Favored Region: 275 Ramachandran favored: 96.83% Number of Outliers: 2 Ramachandran outliers: 0.70% |
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Local Quality |
QMEANBrane Score: 0.77 |
||||
| Click to Save Local Quality Plot in PNG Format | |||||
| References | |||||
| 1 | NMR structure note: solution structure of Ca2? binding domain 2B of the third isoform of the Na?/Ca2? exchanger. J Biomol NMR. 2012 Sep;54(1):115-21. | ||||
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