Modelled Stucture
Method: Homology modeling
Teplate PDB: 6JPA_A
Identity: 48.82%
Minimized Score: -1476.087
Detail: Structure Info
Detail Information of Inter-species Structural Difference
| General Information of Drug Transporter (DT) | |||||
|---|---|---|---|---|---|
| DT ID | DTD0520 Transporter Info | ||||
| Gene Name | CACNA1E | ||||
| Protein Name | Voltage-gated calcium channel alpha Cav2.3 | ||||
| Gene ID | |||||
| UniProt ID | |||||
| 3D Structure |
|
||||
| Inter-species Structural Differences (ISD) | |||||
| Mus musculus (Mouse) | |||||
| Gene Name | Cacna1e | ||||
| UniProt ID | |||||
| UniProt Entry | |||||
| 3D Structure |
Method: Homology modeling Teplate PDB: 5GJV_A Sequence Length: 846 Identity: 45.195% |
||||
| Click to Save PDB File in TXT Format | |||||
| Performance | Minimized Score | -1347.635 kcal/mol | |||
| Ramachandra Favored |
Poor |
||||
| QMEANBrane Quality |
Medium |
||||
| Ramachandran Plot |
Ramz Z Score: -2.03 ± 0.27 Residues in Favored Region: 789 Ramachandran favored: 93.48% Number of Outliers: 10 Ramachandran outliers: 1.18% |
||||
| Click to Save Ramachandran Plot in PNG Format | |||||
| Local Quality |
QMEANBrane Score: 0.73 |
||||
| Click to Save Local Quality Plot in PNG Format | |||||
| Inter-species Structural Differences (ISD) | |||||
| Rattus norvegicus (Rat) | |||||
| Gene Name | Cacna1e | ||||
| UniProt ID | |||||
| UniProt Entry | |||||
| 3D Structure |
Method: Homology modeling Teplate PDB: 5GJV_A Sequence Length: 868 Identity: 44.593% |
||||
| Click to Save PDB File in TXT Format | |||||
| Performance | Minimized Score | -1236.48 kcal/mol | |||
| Ramachandra Favored |
Poor |
||||
| QMEANBrane Quality |
Medium |
||||
| Ramachandran Plot |
Ramz Z Score: -1.52 ± 0.27 Residues in Favored Region: 809 Ramachandran favored: 93.42% Number of Outliers: 12 Ramachandran outliers: 1.39% |
||||
| Click to Save Ramachandran Plot in PNG Format | |||||
| Local Quality |
QMEANBrane Score: 0.73 |
||||
| Click to Save Local Quality Plot in PNG Format | |||||
| Experimental Structures of This Model Oganism | |||||
| PDB ID | Scanning Method | Resolution | Expression System | Details | Ref |
| 3DVK | X-ray | 2.3 Å | Escherichia coli | [ 1] | |
| Structure | |||||
| Click to Save PDB File in TXT Format | |||||
| Corresponding chain | B | ||||
| Sequence Length | 1818-1837 | Mutation | No | ||
| Inter-species Structural Differences (ISD) | |||||
| Oryctolagus cuniculus (Rabbit) | |||||
| Gene Name | CACNA1E | ||||
| UniProt ID | |||||
| UniProt Entry | |||||
| 3D Structure |
Method: Homology modeling Teplate PDB: 5GJV_A Sequence Length: 761 Identity: 48.087% |
||||
| Click to Save PDB File in TXT Format | |||||
| Performance | Minimized Score | -1431.605 kcal/mol | |||
| Ramachandra Favored |
Poor |
||||
| QMEANBrane Quality |
Medium |
||||
| Ramachandran Plot |
Ramz Z Score: -2.05 ± 0.28 Residues in Favored Region: 711 Ramachandran favored: 93.68% Number of Outliers: 14 Ramachandran outliers: 1.84% |
||||
| Click to Save Ramachandran Plot in PNG Format | |||||
| Local Quality |
QMEANBrane Score: 0.73 |
||||
| Click to Save Local Quality Plot in PNG Format | |||||
| References | |||||
| 1 | Structures of CaV2 Ca2+/CaM-IQ domain complexes reveal binding modes that underlie calcium-dependent inactivation and facilitation. Structure. 2008 Oct 8;16(10):1455-67. | ||||
If you find any error in data or bug in web service, please kindly report it to Dr. Yin and Dr. Li.