Detail Information of Mutation-induced Spatial Variation
| General Information of Drug Transporter (DT) | |||||
|---|---|---|---|---|---|
| DT ID | DTD0022 Transporter Info | ||||
| Gene Name | SLC15A2 | ||||
| Transporter Name | Peptide transporter 2 | ||||
| Gene ID | |||||
| UniProt ID | |||||
| Mutation-induced Spatial Variation (MSV) of This DT | |||||
| SNP ID | |||||
| Variation Type | L/V | ||||
| Site of GPD | chr3:121924957 (GRCh38.p12) | ||||
| Allele(s) in dbSNP | C>G / C>T | ||||
| Minor Allele Frequency | T=0.4519/2263 | ||||
| GPD Details | GPD Info | ||||
| Structure Details | |||||
| Modeling Method | Homology modeling | ||||
| Template PDB | 2XUT_A | Identity | 30.474% | ||
| Model Performance | Minimized Score | -620.452 kcal/mol | |||
| Ramachandra Favored |
Poor |
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| QMEANBrane Quality |
Medium |
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| Ramachandran Plot |
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Ramz Z Score | -2.36 ± 0.39 | ||||
| Residues in Favored Region | 367 | Percentage of Favorable Residues | 93.62% | ||
| Number of Outliers | 5 | Ramachandran outliers | 1.28% | ||
| Local Quality |
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| Click to Save Local Quality Plot in PNG Format | |||||
| QMEANBrane Score | 0.73 | ||||
| SNP ID | |||||
| Variation Type | L/F | ||||
| Site of GPD | chr3:121924957 (GRCh38.p12) | ||||
| Allele(s) in dbSNP | C>G / C>T | ||||
| Minor Allele Frequency | T=0.4519/2263 | ||||
| GPD Details | GPD Info | ||||
| Structure Details | |||||
| Modeling Method | Homology modeling | ||||
| Template PDB | 2XUT_A | Identity | 30.474% | ||
| Model Performance | Minimized Score | -566.947 kcal/mol | |||
| Ramachandra Favored |
Poor |
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| QMEANBrane Quality |
Medium |
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| Ramachandran Plot |
|
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Ramz Z Score | -2.6 ± 0.36 | ||||
| Residues in Favored Region | 362 | Percentage of Favorable Residues | 92.35% | ||
| Number of Outliers | 5 | Ramachandran outliers | 1.28% | ||
| Local Quality |
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| Click to Save Local Quality Plot in PNG Format | |||||
| QMEANBrane Score | 0.72 | ||||
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