Detail Information of Mutation-induced Spatial Variation
| General Information of Drug Transporter (DT) | |||||
|---|---|---|---|---|---|
| DT ID | DTD0097 Transporter Info | ||||
| Gene Name | SLC14A2 | ||||
| Transporter Name | Urea transporter 2 | ||||
| Gene ID | |||||
| UniProt ID | |||||
| Mutation-induced Spatial Variation (MSV) of This DT | |||||
| SNP ID | |||||
| Variation Type | V/F | ||||
| Site of GPD | chr18:45672918 (GRCh38.p12) | ||||
| Allele(s) in dbSNP | G>A / G>T | ||||
| Minor Allele Frequency | A=0.1703/853 | ||||
| GPD Details | GPD Info | ||||
| Structure Details | |||||
| Modeling Method | Homology modeling | ||||
| Template PDB | 4EZC_A | Identity | 64.804% | ||
| Model Performance | Minimized Score | -998.1 kcal/mol | |||
| Ramachandra Favored |
Medium |
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| QMEANBrane Quality |
High |
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| Ramachandran Plot |
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Ramz Z Score | -1.01 ± 0.4 | ||||
| Residues in Favored Region | 346 | Percentage of Favorable Residues | 97.46% | ||
| Number of Outliers | 0 | Ramachandran outliers | 0.00% | ||
| Local Quality |
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| Click to Save Local Quality Plot in PNG Format | |||||
| QMEANBrane Score | 0.85 | ||||
| SNP ID | |||||
| Variation Type | V/I | ||||
| Site of GPD | chr18:45672918 (GRCh38.p12) | ||||
| Allele(s) in dbSNP | G>A / G>T | ||||
| Minor Allele Frequency | A=0.1703/853 | ||||
| GPD Details | GPD Info | ||||
| Structure Details | |||||
| Modeling Method | Homology modeling | ||||
| Template PDB | 4EZC_A | Identity | 64.804% | ||
| Model Performance | Minimized Score | -988.562 kcal/mol | |||
| Ramachandra Favored |
Excellent |
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| QMEANBrane Quality |
High |
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| Ramachandran Plot |
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Ramz Z Score | -0.67 ± 0.4 | ||||
| Residues in Favored Region | 349 | Percentage of Favorable Residues | 98.31% | ||
| Number of Outliers | 0 | Ramachandran outliers | 0.00% | ||
| Local Quality |
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| Click to Save Local Quality Plot in PNG Format | |||||
| QMEANBrane Score | 0.84 | ||||
| SNP ID | |||||
| Variation Type | A/T | ||||
| Site of GPD | chr18:45682394 (GRCh38.p12) | ||||
| Allele(s) in dbSNP | G>A | ||||
| Minor Allele Frequency | A=0.4277/2142 | ||||
| GPD Details | GPD Info | ||||
| Structure Details | |||||
| Modeling Method | Homology modeling | ||||
| Template PDB | 4EZC_A | Identity | 65.084% | ||
| Model Performance | Minimized Score | -987.773 kcal/mol | |||
| Ramachandra Favored |
Medium |
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| QMEANBrane Quality |
High |
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| Ramachandran Plot |
|
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Ramz Z Score | -0.64 ± 0.37 | ||||
| Residues in Favored Region | 345 | Percentage of Favorable Residues | 97.18% | ||
| Number of Outliers | 0 | Ramachandran outliers | 0.00% | ||
| Local Quality |
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| Click to Save Local Quality Plot in PNG Format | |||||
| QMEANBrane Score | 0.85 | ||||
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