Detail Information of Mutation-induced Spatial Variation
| General Information of Drug Transporter (DT) | |||||
|---|---|---|---|---|---|
| DT ID | DTD0244 Transporter Info | ||||
| Gene Name | SLC28A1 | ||||
| Transporter Name | Concentrative nucleoside transporter 1 | ||||
| Gene ID | |||||
| UniProt ID | |||||
| Mutation-induced Spatial Variation (MSV) of This DT | |||||
| SNP ID | |||||
| Variation Type | D/Y | ||||
| Site of GPD | chr15:84935498 (GRCh38.p12) | ||||
| Allele(s) in dbSNP | G>A / G>T | ||||
| Minor Allele Frequency | A=0.2081/1042 | ||||
| GPD Details | GPD Info | ||||
| Structure Details | |||||
| Modeling Method | Homology modeling | ||||
| Template PDB | 6KSW_A | Identity | 46.859% | ||
| Model Performance | Minimized Score | -1186.057 kcal/mol | |||
| Ramachandra Favored |
Medium |
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| QMEANBrane Quality |
Medium |
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| Ramachandran Plot |
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Ramz Z Score | -1.78 ± 0.32 | ||||
| Residues in Favored Region | 552 | Percentage of Favorable Residues | 97.18% | ||
| Number of Outliers | 4 | Ramachandran outliers | 0.70% | ||
| Local Quality |
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| Click to Save Local Quality Plot in PNG Format | |||||
| QMEANBrane Score | 0.79 | ||||
| SNP ID | |||||
| Variation Type | D/N | ||||
| Site of GPD | chr15:84935498 (GRCh38.p12) | ||||
| Allele(s) in dbSNP | G>A / G>T | ||||
| Minor Allele Frequency | A=0.2081/1042 | ||||
| GPD Details | GPD Info | ||||
| Structure Details | |||||
| Modeling Method | Homology modeling | ||||
| Template PDB | 6KSW_A | Identity | 46.859% | ||
| Model Performance | Minimized Score | -1185.948 kcal/mol | |||
| Ramachandra Favored |
Medium |
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| QMEANBrane Quality |
Medium |
||||
| Ramachandran Plot |
|
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Ramz Z Score | -1.46 ± 0.33 | ||||
| Residues in Favored Region | 547 | Percentage of Favorable Residues | 96.30% | ||
| Number of Outliers | 4 | Ramachandran outliers | 0.70% | ||
| Local Quality |
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| Click to Save Local Quality Plot in PNG Format | |||||
| QMEANBrane Score | 0.77 | ||||
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