Detail Information of Mutation-induced Spatial Variation
General Information of Drug Transporter (DT) | |||||
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DT ID | DTD0244 Transporter Info | ||||
Gene Name | SLC28A1 | ||||
Transporter Name | Concentrative nucleoside transporter 1 | ||||
Gene ID | |||||
UniProt ID | |||||
Mutation-induced Spatial Variation (MSV) of This DT | |||||
SNP ID | |||||
Variation Type | D/Y | ||||
Site of GPD | chr15:84935498 (GRCh38.p12) | ||||
Allele(s) in dbSNP | G>A / G>T | ||||
Minor Allele Frequency | A=0.2081/1042 | ||||
GPD Details | GPD Info | ||||
Structure Details | |||||
Modeling Method | Homology modeling | ||||
Template PDB | 6KSW_A | Identity | 46.859% | ||
Model Performance | Minimized Score | -1186.057 kcal/mol | |||
Ramachandra Favored |
Medium |
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QMEANBrane Quality |
Medium |
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Ramachandran Plot | |||||
Click to Save Ramachandran Plot in PNG Format | |||||
Ramz Z Score | -1.78 ± 0.32 | ||||
Residues in Favored Region | 552 | Percentage of Favorable Residues | 97.18% | ||
Number of Outliers | 4 | Ramachandran outliers | 0.70% | ||
Local Quality | |||||
Click to Save Local Quality Plot in PNG Format | |||||
QMEANBrane Score | 0.79 | ||||
SNP ID | |||||
Variation Type | D/N | ||||
Site of GPD | chr15:84935498 (GRCh38.p12) | ||||
Allele(s) in dbSNP | G>A / G>T | ||||
Minor Allele Frequency | A=0.2081/1042 | ||||
GPD Details | GPD Info | ||||
Structure Details | |||||
Modeling Method | Homology modeling | ||||
Template PDB | 6KSW_A | Identity | 46.859% | ||
Model Performance | Minimized Score | -1185.948 kcal/mol | |||
Ramachandra Favored |
Medium |
||||
QMEANBrane Quality |
Medium |
||||
Ramachandran Plot | |||||
Click to Save Ramachandran Plot in PNG Format | |||||
Ramz Z Score | -1.46 ± 0.33 | ||||
Residues in Favored Region | 547 | Percentage of Favorable Residues | 96.30% | ||
Number of Outliers | 4 | Ramachandran outliers | 0.70% | ||
Local Quality | |||||
Click to Save Local Quality Plot in PNG Format | |||||
QMEANBrane Score | 0.77 | ||||
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