Detail Information of Mutation-induced Spatial Variation
| General Information of Drug Transporter (DT) | |||||
|---|---|---|---|---|---|
| DT ID | DTD0526 Transporter Info | ||||
| Gene Name | SCN1A | ||||
| Transporter Name | Voltage-gated sodium channel alpha Nav1.1 | ||||
| Gene ID | |||||
| UniProt ID | |||||
| Mutation-induced Spatial Variation (MSV) of This DT | |||||
| SNP ID | |||||
| Variation Type | A/P | ||||
| Site of GPD | chr2:166036278 (GRCh38.p12) | ||||
| Allele(s) in dbSNP | C>T | ||||
| Minor Allele Frequency | C=0.2115/1059 | ||||
| GPD Details | GPD Info | ||||
| Structure Details | |||||
| Modeling Method | Homology modeling | ||||
| Template PDB | 6J8E_A | Identity | 86.203% | ||
| Model Performance | Minimized Score | -3262.452 kcal/mol | |||
| Ramachandra Favored |
Poor |
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| QMEANBrane Quality |
Medium |
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| Ramachandran Plot |
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Ramz Z Score | -1.31 ± 0.18 | ||||
| Residues in Favored Region | 1903 | Percentage of Favorable Residues | 94.82% | ||
| Number of Outliers | 24 | Ramachandran outliers | 1.20% | ||
| Local Quality |
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| Click to Save Local Quality Plot in PNG Format | |||||
| QMEANBrane Score | 0.71 | ||||
| SNP ID | |||||
| Variation Type | A/T | ||||
| Site of GPD | chr2:166036278 (GRCh38.p12) | ||||
| Allele(s) in dbSNP | C>T | ||||
| Minor Allele Frequency | C=0.2115/1059 | ||||
| GPD Details | GPD Info | ||||
| Structure Details | |||||
| Modeling Method | Homology modeling | ||||
| Template PDB | 6J8E_A | Identity | 86.253% | ||
| Model Performance | Minimized Score | -3279.657 kcal/mol | |||
| Ramachandra Favored |
Medium |
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| QMEANBrane Quality |
Medium |
||||
| Ramachandran Plot |
|
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Ramz Z Score | -1.5 ± 0.17 | ||||
| Residues in Favored Region | 1916 | Percentage of Favorable Residues | 95.47% | ||
| Number of Outliers | 24 | Ramachandran outliers | 1.20% | ||
| Local Quality |
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| Click to Save Local Quality Plot in PNG Format | |||||
| QMEANBrane Score | 0.71 | ||||
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