Detail Information of Transcriptional Regulations

General Information of Drug Transporter (DT)
DT ID DTD0042 Transporter Info
Gene Name ABCA4
Transporter Name ATP-binding cassette sub-family A member 4
Gene ID
24
UniProt ID
P78363

Transcriptional Regulation of This DT (TSR)

TF Superclass 1: Basic domains

      Class 1.1: Basic leucine zipper factors

Click to Show/Hide the Full List of 3 TF(s) Regulating This DT

        FOSL1 

Click to Show/Hide to Show 1 Transcriptional Phenomena      

       Transcriptional Phenomenon 1

 Direct binding to ABCA4 gene [1]

TF Protein Name

 Fos-related antigen 1 Transcription Factor Info

Tissue

 Breast; Colon

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Fos-related antigen 1 (FOSL1) can directly bind to the ABCA4 gene, which in turn affects the expression or function of the drug transporter ATP-binding cassette sub-family A member 4.

        JUND 

Click to Show/Hide to Show 1 Transcriptional Phenomena      

       Transcriptional Phenomenon 1

 Direct binding to ABCA4 gene [2]

TF Protein Name

 Transcription factor JunD Transcription Factor Info

Tissue

 Bone marrow; Brain; Cervix; Colon; Coronary artery; Liver; Lung

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Transcription factor JunD (JUND) can directly bind to the ABCA4 gene, which in turn affects the expression or function of the drug transporter ATP-binding cassette sub-family A member 4.

        mutated HLF (c.761A>T) 

Click to Show/Hide to Show 1 Transcriptional Phenomena      

       Transcriptional Phenomenon 1

 Activation of ABCA4 gene in stargardt disease condition [3]

TF Protein Name

 Hepatic leukemia factor Transcription Factor Info

Studied Phenotype

 Stargardt disease [ICD11: 9B70]

Tissue

 Eye

Related DT Changes

 Up regulating

Experimental Material

 human Stargardt disease cell isolates

Detailed Description

 mutated Hepatic leukemia factor (mutated HLF (c.761A>T)) has been reported to activate the transcription of ABCA4 gene in stargardt disease condition, which leads to an increased expression of the drug transporter ATP-binding cassette sub-family A member 4.

TF Superclass 2: Zinc-coordinating DNA-binding domains

      Class 2.1: Nuclear receptors with C4 zinc fingers

Click to Show/Hide the Full List of 1 TF(s) Regulating This DT

        ESR1 

Click to Show/Hide to Show 1 Transcriptional Phenomena      

       Transcriptional Phenomenon 1

 Direct binding to ABCA4 gene [4]

TF Protein Name

 Estrogen receptor Transcription Factor Info

Tissue

 Breast

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Estrogen receptor (ESR1) can directly bind to the ABCA4 gene, which in turn affects the expression or function of the drug transporter ATP-binding cassette sub-family A member 4.

      Class 2.2: Other C4 zinc finger-type factors

Click to Show/Hide the Full List of 2 TF(s) Regulating This DT

        GATA3 

Click to Show/Hide to Show 1 Transcriptional Phenomena      

       Transcriptional Phenomenon 1

 Direct binding to ABCA4 gene [5]

TF Protein Name

 Trans-acting T-cell-specific transcription factor GATA-3 Transcription Factor Info

Tissue

 Blood; Brain; Breast

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Trans-acting T-cell-specific transcription factor GATA-3 (GATA3) can directly bind to the ABCA4 gene, which in turn affects the expression or function of the drug transporter ATP-binding cassette sub-family A member 4.

        mutated GATA2 (c.761C>A) 

Click to Show/Hide to Show 1 Transcriptional Phenomena      

       Transcriptional Phenomenon 1

 Activation of ABCA4 gene in stargardt disease condition [3]

TF Protein Name

 Endothelial transcription factor GATA-2 Transcription Factor Info

Studied Phenotype

 Stargardt disease [ICD11: 9B70]

Tissue

 Eye

Related DT Changes

 Up regulating

Experimental Material

 human Stargardt disease cell isolates

Detailed Description

 mutated Endothelial transcription factor GATA-2 (mutated GATA2 (c.761C>A)) has been reported to activate the transcription of ABCA4 gene in stargardt disease condition, which leads to an increased expression of the drug transporter ATP-binding cassette sub-family A member 4.

      Class 2.3: C2H2 zinc finger factors

Click to Show/Hide the Full List of 1 TF(s) Regulating This DT

        MAZ 

Click to Show/Hide to Show 1 Transcriptional Phenomena      

       Transcriptional Phenomenon 1

 Direct binding to ABCA4 gene [1]

TF Protein Name

 Myc-associated zinc finger protein Transcription Factor Info

Tissue

 Blood; Bone marrow; Lung

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Myc-associated zinc finger protein (MAZ) can directly bind to the ABCA4 gene, which in turn affects the expression or function of the drug transporter ATP-binding cassette sub-family A member 4.

TF Superclass 3: Helix-turn-helix domains

      Class 3.3: Fork head / winged helix factors

Click to Show/Hide the Full List of 2 TF(s) Regulating This DT

        FOXA1 

Click to Show/Hide to Show 1 Transcriptional Phenomena      

       Transcriptional Phenomenon 1

 Direct binding to ABCA4 gene [4]

TF Protein Name

 Hepatocyte nuclear factor 3-alpha Transcription Factor Info

Tissue

 Breast; Embryo; Liver; Lung; Pancreatic ductal; Prostate; Uterus

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Hepatocyte nuclear factor 3-alpha (FOXA1) can directly bind to the ABCA4 gene, which in turn affects the expression or function of the drug transporter ATP-binding cassette sub-family A member 4.

        FOXA2 

Click to Show/Hide to Show 1 Transcriptional Phenomena      

       Transcriptional Phenomenon 1

 Direct binding to ABCA4 gene [5]

TF Protein Name

 Hepatocyte nuclear factor 3-beta Transcription Factor Info

Tissue

 Colon

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Hepatocyte nuclear factor 3-beta (FOXA2) can directly bind to the ABCA4 gene, which in turn affects the expression or function of the drug transporter ATP-binding cassette sub-family A member 4.

      Class 3.5: Tryptophan cluster factors

Click to Show/Hide the Full List of 1 TF(s) Regulating This DT

        FLI1 

Click to Show/Hide to Show 1 Transcriptional Phenomena      

       Transcriptional Phenomenon 1

 Direct binding to ABCA4 gene [2]

TF Protein Name

 Friend leukemia integration 1 transcription factor Transcription Factor Info

Tissue

 Blood; Mesenchymal; Vein

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Friend leukemia integration 1 transcription factor (FLI1) can directly bind to the ABCA4 gene, which in turn affects the expression or function of the drug transporter ATP-binding cassette sub-family A member 4.

      Class 3.7: ARID domain factors

Click to Show/Hide the Full List of 1 TF(s) Regulating This DT

        ARID3A 

Click to Show/Hide to Show 1 Transcriptional Phenomena      

       Transcriptional Phenomenon 1

 Direct binding to ABCA4 gene [1]

TF Protein Name

 AT-rich interactive domain-containing protein 3A Transcription Factor Info

Tissue

 Liver

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 AT-rich interactive domain-containing protein 3A (ARID3A) can directly bind to the ABCA4 gene, which in turn affects the expression or function of the drug transporter ATP-binding cassette sub-family A member 4.
References
1 hTFtarget: A Comprehensive Database for Regulations of Human Transcription Factors and Their Targets. Genomics Proteomics Bioinformatics. 2020 Apr;18(2):120-450. (ID:ENSG00000198691)
2 NCBI GEO: archive for functional genomics data sets--update. Nucleic Acids Res. 2013 Jan;41(D1):D991-5.
3 Functional characterization of ABCA4 genetic variants related to Stargardt disease. Sci Rep. 2022 Dec 24;12(1):22282.
4 Closure of the NCBI SRA and implications for the long-term future of genomics data storage. Genome Biol. 2011;12(3):402.
5 The Encyclopedia of DNA elements (ENCODE): data portal update. Nucleic Acids Res. 2018 Jan 4;46(D1):D794-D801

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