Detail Information of Transcriptional Regulations

General Information of Drug Transporter (DT)
DT ID DTD0372 Transporter Info
Gene Name SLC46A1
Transporter Name Proton-coupled folate transporter
Gene ID
113235
UniProt ID
Q96NT5

Transcriptional Regulation of This DT (TSR)

TF Superclass 1: Basic domains

      Class 1.1: Basic leucine zipper factors

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        CREB1 

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       Transcriptional Phenomenon 1

 Direct binding to SLC46A1 gene [1]

TF Protein Name

 Cyclic AMP-responsive element-binding protein 1 Transcription Factor Info

Tissue

 Liver

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Cyclic AMP-responsive element-binding protein 1 (CREB1) can directly bind to the SLC46A1 gene, which in turn affects the expression or function of the drug transporter Proton-coupled folate transporter.

      Class 1.2: Basic helix-loop-helix factors

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        ASCL1 

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       Transcriptional Phenomenon 1

 Direct binding to SLC46A1 gene [2]

TF Protein Name

 Achaete-scute homolog 1 Transcription Factor Info

Tissue

 Embryo; Lung

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Achaete-scute homolog 1 (ASCL1) can directly bind to the SLC46A1 gene, which in turn affects the expression or function of the drug transporter Proton-coupled folate transporter.

        USF1 

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       Transcriptional Phenomenon 1

 Direct binding to SLC46A1 gene [3]

TF Protein Name

 Upstream stimulatory factor 1 Transcription Factor Info

Tissue

 Bone marrow; Embryo; Uterus

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Upstream stimulatory factor 1 (USF1) can directly bind to the SLC46A1 gene, which in turn affects the expression or function of the drug transporter Proton-coupled folate transporter.

        USF2 

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       Transcriptional Phenomenon 1

 Direct binding to SLC46A1 gene [4]

TF Protein Name

 Upstream stimulatory factor 2 Transcription Factor Info

Tissue

 Cervix

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Upstream stimulatory factor 2 (USF2) can directly bind to the SLC46A1 gene, which in turn affects the expression or function of the drug transporter Proton-coupled folate transporter.

TF Superclass 2: Zinc-coordinating DNA-binding domains

      Class 2.1: Nuclear receptors with C4 zinc fingers

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        NR2F2 

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       Transcriptional Phenomenon 1

 Direct binding to SLC46A1 gene [1]

TF Protein Name

 COUP transcription factor 2 Transcription Factor Info

Tissue

 Breast; Liver

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 COUP transcription factor 2 (NR2F2) can directly bind to the SLC46A1 gene, which in turn affects the expression or function of the drug transporter Proton-coupled folate transporter.

        VDR 

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       Transcriptional Phenomenon 1

 Activation of SLC46A1 gene in health condition [5]

TF Protein Name

 Vitamin D3 receptor Transcription Factor Info

Studied Phenotype

 Heallth [ICD11: N.A]

Tissue

 Duodenum

Related DT Changes

 Up regulating

Experimental Material

 Wistar rats

Detailed Description

 Vitamin D3 receptor (VDR) has been reported to activate the transcription of SLC46A1 gene in health condition, which leads to an increased expression of the drug transporter Proton-coupled folate transporter.

      Class 2.2: Other C4 zinc finger-type factors

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        GATA1 

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       Transcriptional Phenomenon 1

 Direct binding to SLC46A1 gene [2]

TF Protein Name

 Erythroid transcription factor Transcription Factor Info

Tissue

 Blood; Bone marrow

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Erythroid transcription factor (GATA1) can directly bind to the SLC46A1 gene, which in turn affects the expression or function of the drug transporter Proton-coupled folate transporter.

      Class 2.3: C2H2 zinc finger factors

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        KLF9 

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       Transcriptional Phenomenon 1

 Direct binding to SLC46A1 gene [2]

TF Protein Name

 Krueppel-like factor 9 Transcription Factor Info

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Krueppel-like factor 9 (KLF9) can directly bind to the SLC46A1 gene, which in turn affects the expression or function of the drug transporter Proton-coupled folate transporter.

        MAZ 

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       Transcriptional Phenomenon 1

 Direct binding to SLC46A1 gene [1]

TF Protein Name

 Myc-associated zinc finger protein Transcription Factor Info

Tissue

 Blood; Bone marrow; Cervix; Liver; Lung

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Myc-associated zinc finger protein (MAZ) can directly bind to the SLC46A1 gene, which in turn affects the expression or function of the drug transporter Proton-coupled folate transporter.

        REST 

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       Transcriptional Phenomenon 1

 Direct binding to SLC46A1 gene [3]

TF Protein Name

 RE1-silencing transcription factor Transcription Factor Info

Tissue

 Embryo; Lung

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 RE1-silencing transcription factor (REST) can directly bind to the SLC46A1 gene, which in turn affects the expression or function of the drug transporter Proton-coupled folate transporter.

        ZBTB7A 

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       Transcriptional Phenomenon 1

 Direct binding to SLC46A1 gene [4]

TF Protein Name

 Zinc finger and BTB domain-containing protein 7A Transcription Factor Info

Tissue

 Bone marrow; Uterus

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Zinc finger and BTB domain-containing protein 7A (ZBTB7A) can directly bind to the SLC46A1 gene, which in turn affects the expression or function of the drug transporter Proton-coupled folate transporter.

        ZNF263 

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       Transcriptional Phenomenon 1

 Direct binding to SLC46A1 gene [3]

TF Protein Name

 Zinc finger protein 263 Transcription Factor Info

Tissue

 Kidney

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Zinc finger protein 263 (ZNF263) can directly bind to the SLC46A1 gene, which in turn affects the expression or function of the drug transporter Proton-coupled folate transporter.

TF Superclass 3: Helix-turn-helix domains

      Class 3.1: Homeo domain factors

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        ZEB1 

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       Transcriptional Phenomenon 1

 Direct binding to SLC46A1 gene [2]

TF Protein Name

 Zinc finger E-box-binding homeobox 1 Transcription Factor Info

Tissue

 Blood; Liver

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Zinc finger E-box-binding homeobox 1 (ZEB1) can directly bind to the SLC46A1 gene, which in turn affects the expression or function of the drug transporter Proton-coupled folate transporter.

      Class 3.3: Fork head / winged helix factors

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        E2F6 

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       Transcriptional Phenomenon 1

 Direct binding to SLC46A1 gene [1]

TF Protein Name

 Transcription factor E2F6 Transcription Factor Info

Tissue

 Bone marrow; Embryo

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Transcription factor E2F6 (E2F6) can directly bind to the SLC46A1 gene, which in turn affects the expression or function of the drug transporter Proton-coupled folate transporter.

        FOXA2 

Click to Show/Hide to Show 1 Transcriptional Phenomena      

       Transcriptional Phenomenon 1

 Direct binding to SLC46A1 gene [3]

TF Protein Name

 Hepatocyte nuclear factor 3-beta Transcription Factor Info

Tissue

 Colon

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Hepatocyte nuclear factor 3-beta (FOXA2) can directly bind to the SLC46A1 gene, which in turn affects the expression or function of the drug transporter Proton-coupled folate transporter.

      Class 3.5: Tryptophan cluster factors

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        FLI1 

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       Transcriptional Phenomenon 1

 Direct binding to SLC46A1 gene [1]

TF Protein Name

 Friend leukemia integration 1 transcription factor Transcription Factor Info

Tissue

 Blood; Mesenchymal; Vein

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Friend leukemia integration 1 transcription factor (FLI1) can directly bind to the SLC46A1 gene, which in turn affects the expression or function of the drug transporter Proton-coupled folate transporter.

        IRF1 

Click to Show/Hide to Show 1 Transcriptional Phenomena      

       Transcriptional Phenomenon 1

 Direct binding to SLC46A1 gene [4]

TF Protein Name

 Interferon regulatory factor 1 Transcription Factor Info

Tissue

 Blood; Pancreatic ductal

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Interferon regulatory factor 1 (IRF1) can directly bind to the SLC46A1 gene, which in turn affects the expression or function of the drug transporter Proton-coupled folate transporter.

        SPI1 

Click to Show/Hide to Show 1 Transcriptional Phenomena      

       Transcriptional Phenomenon 1

 Direct binding to SLC46A1 gene [3]

TF Protein Name

 Transcription factor PU.1 Transcription Factor Info

Tissue

 Adrenal gland; Blood; Bone marrow; Brain; Breast; Embryo; Foreskin; Heart; Intestine; Kidney; Lung; Muscle; Penis; Placenta; Renal cortex; Renal pelvis; Skin; Spinal cord; Stomach; Testes; Umbilical cord blood

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Transcription factor PU.1 (SPI1) can directly bind to the SLC46A1 gene, which in turn affects the expression or function of the drug transporter Proton-coupled folate transporter.

TF Superclass 5: alpha-Helices exposed by beta-structures

      Class 5.1: MADS box factors

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        SRF 

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       Transcriptional Phenomenon 1

 Direct binding to SLC46A1 gene [4]

TF Protein Name

 Serum response factor Transcription Factor Info

Tissue

 Embryo; Uterus

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Serum response factor (SRF) can directly bind to the SLC46A1 gene, which in turn affects the expression or function of the drug transporter Proton-coupled folate transporter.

TF Superclass 6: Immunoglobulin fold

      Class 6.1: Rel homology region factors

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        EBF1 

Click to Show/Hide to Show 1 Transcriptional Phenomena      

       Transcriptional Phenomenon 1

 Direct binding to SLC46A1 gene [4]

TF Protein Name

 Transcription factor COE1 Transcription Factor Info

Tissue

 Blood

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Transcription factor COE1 (EBF1) can directly bind to the SLC46A1 gene, which in turn affects the expression or function of the drug transporter Proton-coupled folate transporter.

TF Superclass 7: beta-Hairpin exposed by an alpha/beta-scaffold

      Class 7.1: SMAD/NF-1 DNA-binding domain factors

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        NFIC 

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       Transcriptional Phenomenon 1

 Direct binding to SLC46A1 gene [2]

TF Protein Name

 Nuclear factor 1 C-type Transcription Factor Info

Tissue

 Uterus

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Nuclear factor 1 C-type (NFIC) can directly bind to the SLC46A1 gene, which in turn affects the expression or function of the drug transporter Proton-coupled folate transporter.

TF Superclass 10: Yet undefined DNA-binding domains

      Class 10: Uncharacterized

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        NRF1 

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       Transcriptional Phenomenon 1

 Activation of SLC46A1 gene in hereditary folate malabsorption condition [6]

TF Protein Name

 Nuclear respiratory factor 1 Transcription Factor Info

Affected Drug/Substrate

 Folate

Studied Phenotype

 Hereditary folate malabsorption [ICD11: 5C63.1]

Tissue

 Cervix

Related DT Changes

 Up regulating

Experimental Material

 Human human papillomavirus-related endocervical adenocarcinoma cells (HeLa)

Detailed Description

 Nuclear respiratory factor 1 (NRF1) has been reported to activate the transcription of SLC46A1 gene in hereditary folate malabsorption condition, which leads to an increased expression of the drug transporter Proton-coupled folate transporter.
References
1 Closure of the NCBI SRA and implications for the long-term future of genomics data storage. Genome Biol. 2011;12(3):402.
2 NCBI GEO: archive for functional genomics data sets--update. Nucleic Acids Res. 2013 Jan;41(D1):D991-5.
3 The Encyclopedia of DNA elements (ENCODE): data portal update. Nucleic Acids Res. 2018 Jan 4;46(D1):D794-D801
4 hTFtarget: A Comprehensive Database for Regulations of Human Transcription Factors and Their Targets. Genomics Proteomics Bioinformatics. 2020 Apr;18(2):120-164. (ID:ENSG00000076351)
5 Vitamin D3 and its nuclear receptor increase the expression and activity of the human proton-coupled folate transporter. Mol Pharmacol. 2009 Nov;76(5):1062-71.
6 The obligatory intestinal folate transporter PCFT (SLC46A1) is regulated by nuclear respiratory factor 1. J Biol Chem. 2010 Oct 29;285(44):33602-13.

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