Detail Information of Transcriptional Regulations

General Information of Drug Transporter (DT)
DT ID DTD0459 Transporter Info
Gene Name SLC6A7
Transporter Name Sodium-dependent proline transporter
Gene ID
6534
UniProt ID
Q99884

Transcriptional Regulation of This DT (TSR)

TF Superclass 1: Basic domains

      Class 1.1: Basic leucine zipper factors

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        CEBPB 

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       Transcriptional Phenomenon 1

 Direct binding to SLC6A7 gene [1]

TF Protein Name

 CCAAT/enhancer-binding protein beta Transcription Factor Info

Tissue

 Blood; Breast; Colon

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 CCAAT/enhancer-binding protein beta (CEBPB) can directly bind to the SLC6A7 gene, which in turn affects the expression or function of the drug transporter Sodium-dependent proline transporter.

      Class 1.2: Basic helix-loop-helix factors

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        TCF21 

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       Transcriptional Phenomenon 1

 Direct binding to SLC6A7 gene [2]

TF Protein Name

 Transcription factor 21 Transcription Factor Info

Tissue

 Coronary artery

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Transcription factor 21 (TCF21) can directly bind to the SLC6A7 gene, which in turn affects the expression or function of the drug transporter Sodium-dependent proline transporter.

TF Superclass 2: Zinc-coordinating DNA-binding domains

      Class 2.3: C2H2 zinc finger factors

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        MAZ 

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       Transcriptional Phenomenon 1

 Direct binding to SLC6A7 gene [3]

TF Protein Name

 Myc-associated zinc finger protein Transcription Factor Info

Tissue

 Bone marrow; Lung

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Myc-associated zinc finger protein (MAZ) can directly bind to the SLC6A7 gene, which in turn affects the expression or function of the drug transporter Sodium-dependent proline transporter.

        ZNF263 

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       Transcriptional Phenomenon 1

 Direct binding to SLC6A7 gene [1]

TF Protein Name

 Zinc finger protein 263 Transcription Factor Info

Tissue

 Kidney

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Zinc finger protein 263 (ZNF263) can directly bind to the SLC6A7 gene, which in turn affects the expression or function of the drug transporter Sodium-dependent proline transporter.

TF Superclass 3: Helix-turn-helix domains

      Class 3.1: Homeo domain factors

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        HNF1B 

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       Transcriptional Phenomenon 1

 Activation of SLC6A7 gene in renal cysts condition [4]

TF Protein Name

 Hepatocyte nuclear factor 1-beta Transcription Factor Info

Studied Phenotype

 Renal cysts [ICD11: GB80]

Tissue

 Kidney

Related DT Changes

 Up regulating

Experimental Material

 Zebrafish TgPT::EGFP)

Detailed Description

 Hepatocyte nuclear factor 1-beta (HNF1B) has been reported to activate the transcription of SLC6A7 gene in renal cysts condition, which leads to an increased expression of the drug transporter Sodium-dependent proline transporter.

        PBX1 

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       Transcriptional Phenomenon 1

 Direct binding to SLC6A7 gene [1]

TF Protein Name

 Pre-B-cell leukemia transcription factor 1 Transcription Factor Info

Tissue

 Bone marrow

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Pre-B-cell leukemia transcription factor 1 (PBX1) can directly bind to the SLC6A7 gene, which in turn affects the expression or function of the drug transporter Sodium-dependent proline transporter.

      Class 3.3: Fork head / winged helix factors

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        E2F6 

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       Transcriptional Phenomenon 1

 Direct binding to SLC6A7 gene [5]

TF Protein Name

 Transcription factor E2F6 Transcription Factor Info

Tissue

 Embryo

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Transcription factor E2F6 (E2F6) can directly bind to the SLC6A7 gene, which in turn affects the expression or function of the drug transporter Sodium-dependent proline transporter.

        FOXA2 

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       Transcriptional Phenomenon 1

 Direct binding to SLC6A7 gene [3]

TF Protein Name

 Hepatocyte nuclear factor 3-beta Transcription Factor Info

Tissue

 Embryo; Liver

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Hepatocyte nuclear factor 3-beta (FOXA2) can directly bind to the SLC6A7 gene, which in turn affects the expression or function of the drug transporter Sodium-dependent proline transporter.

      Class 3.5: Tryptophan cluster factors

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        SPI1 

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       Transcriptional Phenomenon 1

 Direct binding to SLC6A7 gene [2]

TF Protein Name

 Transcription factor PU.1 Transcription Factor Info

Tissue

 Blood; Brain; Breast; Embryo; Foreskin; Heart; Intestine; Kidney; Lung; Muscle; Penis; Placenta; Renal cortex; Renal pelvis; Skin; Spinal cord; Stomach; Testes; Umbilical cord blood

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Transcription factor PU.1 (SPI1) can directly bind to the SLC6A7 gene, which in turn affects the expression or function of the drug transporter Sodium-dependent proline transporter.

TF Superclass 10: Yet undefined DNA-binding domains

      Class 10.5: GTF2I domain factors

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        GTF2I 

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       Transcriptional Phenomenon 1

 Direct binding to SLC6A7 gene [5]

TF Protein Name

 General transcription factor II-I Transcription Factor Info

Tissue

 Foreskin

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 General transcription factor II-I (GTF2I) can directly bind to the SLC6A7 gene, which in turn affects the expression or function of the drug transporter Sodium-dependent proline transporter.
References
1 hTFtarget: A Comprehensive Database for Regulations of Human Transcription Factors and Their Targets. Genomics Proteomics Bioinformatics. 2020 Apr;18(2):120-139. (ID:ENSG00000011083)
2 NCBI GEO: archive for functional genomics data sets--update. Nucleic Acids Res. 2013 Jan;41(D1):D991-5.
3 The Encyclopedia of DNA elements (ENCODE): data portal update. Nucleic Acids Res. 2018 Jan 4;46(D1):D794-D801
4 Transcriptional profiling of the zebrafish proximal tubule. Am J Physiol Renal Physiol. 2019 Aug 1;317(2):F478-F488.
5 Closure of the NCBI SRA and implications for the long-term future of genomics data storage. Genome Biol. 2011;12(3):402.

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