Detail Information of Transcriptional Regulations

General Information of Drug Transporter (DT)
DT ID DTD0526 Transporter Info
Gene Name SCN1A
Transporter Name Voltage-gated sodium channel alpha Nav1.1
Gene ID
6323
UniProt ID
P35498

Transcriptional Regulation of This DT (TSR)

TF Superclass 1: Basic domains

      Class 1.1: Basic leucine zipper factors

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        CEBPB 

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       Transcriptional Phenomenon 1

 Direct binding to SCN1A gene [1]

TF Protein Name

 CCAAT/enhancer-binding protein beta Transcription Factor Info

Tissue

 Bone

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 CCAAT/enhancer-binding protein beta (CEBPB) can directly bind to the SCN1A gene, which in turn affects the expression or function of the drug transporter Voltage-gated sodium channel alpha Nav1.1.

TF Superclass 2: Zinc-coordinating DNA-binding domains

      Class 2.3: C2H2 zinc finger factors

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        CTCF 

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       Transcriptional Phenomenon 1

 Direct binding to SCN1A gene [2]

TF Protein Name

 Transcriptional repressor CTCF Transcription Factor Info

Tissue

 Brain

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Transcriptional repressor CTCF (CTCF) can directly bind to the SCN1A gene, which in turn affects the expression or function of the drug transporter Voltage-gated sodium channel alpha Nav1.1.

TF Superclass 3: Helix-turn-helix domains

      Class 3.5: Tryptophan cluster factors

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        SPI1 

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       Transcriptional Phenomenon 1

 Direct binding to SCN1A gene [3]

TF Protein Name

 Transcription factor PU.1 Transcription Factor Info

Tissue

 Brain; Embryo; Foreskin; Heart; Kidney; Lung; Muscle; Penis; Renal cortex; Renal pelvis; Skin; Spinal cord; Umbilical cord blood

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Transcription factor PU.1 (SPI1) can directly bind to the SCN1A gene, which in turn affects the expression or function of the drug transporter Voltage-gated sodium channel alpha Nav1.1.
References
1 hTFtarget: A Comprehensive Database for Regulations of Human Transcription Factors and Their Targets. Genomics Proteomics Bioinformatics. 2020 Apr;18(2):120-309. (ID:ENSG00000144285)
2 Closure of the NCBI SRA and implications for the long-term future of genomics data storage. Genome Biol. 2011;12(3):402.
3 NCBI GEO: archive for functional genomics data sets--update. Nucleic Acids Res. 2013 Jan;41(D1):D991-5.

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