Detail Information of DT Wildtype Structure
General Information of Drug Transporter (DT) | ||||||
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DT ID | DTD0133 Transporter Info | |||||
Gene Name | SLC1A5 | |||||
Transporter Name | Alanine/serine/cysteine/threonine transporter 2 | |||||
Gene ID | ||||||
UniProt ID | ||||||
Modelled Structures of This DT | ||||||
Click to Save PDB File in TXT Format | ||||||
Detail Information of Structural Model | ||||||
Method | Loop building | |||||
Template PDB | 6GCT_A | Identity | 100% | |||
Performance | Minimized Score | -1199.518 kcal/mol | ||||
Ramachandra Favored |
Medium |
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QMEANBrane Quality |
High |
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Ramachandran Plot | ||||||
Click to Save Ramachandran Plot in PNG Format | ||||||
Ramz Z Score | -2.02 ± 0.33 | |||||
Residues in Favored Region | 433 | Ramachandran favored | 97.30% | |||
Number of Outliers | 2 | Ramachandran outliers | 0.45% | |||
Local Quality | ||||||
Click to Save Local Quality Plot in PNG Format | ||||||
QMEANBrane Score | 0.83 | |||||
AlphaFold Protein Structure Database | ||||||
SWISS-MODEL Database | ||||||
Experimental Structures of This DT | ||||||
PDB ID | Scanning Method | Resolution | Expression System | Details | Ref | |
5LLM | X-ray | 3.25 Å | Homo sapiens | [1] | ||
Structure | ||||||
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Corresponding chain | A | |||||
Sequence Length | 158-230 | Mutation | Yes | |||
5LLU | X-ray | 3.32 Å | Homo sapiens | [1] | ||
Structure | ||||||
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Corresponding chain | A | |||||
Sequence Length | 158-230 | Mutation | No | |||
5LM4 | X-ray | 3.1 Å | Homo sapiens | [1] | ||
Structure | ||||||
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Corresponding chain | A | |||||
Sequence Length | 158-230 | Mutation | Yes | |||
5MJU | X-ray | 3.71 Å | Homo sapiens | [1] | ||
Structure | ||||||
Click to Save PDB File in TXT Format | ||||||
Corresponding chain | A | |||||
Sequence Length | 158-230 | Mutation | Yes | |||
6GCT | EM | 3.85 Å | Komagataella pastoris | [2] | ||
Structure | ||||||
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Corresponding chain | A/B/C | |||||
Sequence Length | 1-541 | Mutation | No | |||
6MP6 | EM | 3.54 Å | Homo sapiens | [3] | ||
Structure | ||||||
Click to Save PDB File in TXT Format | ||||||
Corresponding chain | A/B/C | |||||
Sequence Length | 1-541 | Mutation | No | |||
6MPB | EM | 3.84 Å | Homo sapiens | [3] | ||
Structure | ||||||
Click to Save PDB File in TXT Format | ||||||
Corresponding chain | A/B/C | |||||
Sequence Length | 1-541 | Mutation | No | |||
6RVX | EM | 3.61 Å | Komagataella pastoris | [4] | ||
Structure | ||||||
Click to Save PDB File in TXT Format | ||||||
Corresponding chain | A/B/C | |||||
Sequence Length | 1-541 | Mutation | Yes | |||
References | ||||||
1 | Structure and allosteric inhibition of excitatory amino acid transporter 1. Nature. 2017 Apr 27;544(7651):446-451. | |||||
2 | Cryo-EM structure of the human neutral amino acid transporter ASCT2. Nat Struct Mol Biol. 2018 Jun;25(6):515-521. | |||||
3 | Cryo-EM structures of the human glutamine transporter SLC1A5 (ASCT2) in the outward-facing conformation. Elife. 2019 Oct 3;8:e48120. | |||||
4 | A one-gate elevator mechanism for the human neutral amino acid transporter ASCT2. Nat Commun. 2019 Jul 31;10(1):3427. | |||||
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