Detail Information of DT Wildtype Structure
| General Information of Drug Transporter (DT) | ||||||
|---|---|---|---|---|---|---|
| DT ID | DTD0133 Transporter Info | |||||
| Gene Name | SLC1A5 | |||||
| Transporter Name | Alanine/serine/cysteine/threonine transporter 2 | |||||
| Gene ID | ||||||
| UniProt ID | ||||||
| Modelled Structures of This DT | ||||||
| Click to Save PDB File in TXT Format | ||||||
| Detail Information of Structural Model | ||||||
| Method | Loop building | |||||
| Template PDB | 6GCT_A | Identity | 100% | |||
| Performance | Minimized Score | -1199.518 kcal/mol | ||||
| Ramachandra Favored |
Medium |
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| QMEANBrane Quality |
High |
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| Ramachandran Plot |
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| Click to Save Ramachandran Plot in PNG Format | ||||||
| Ramz Z Score | -2.02 ± 0.33 | |||||
| Residues in Favored Region | 433 | Ramachandran favored | 97.30% | |||
| Number of Outliers | 2 | Ramachandran outliers | 0.45% | |||
| Local Quality |
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| Click to Save Local Quality Plot in PNG Format | ||||||
| QMEANBrane Score | 0.83 | |||||
| AlphaFold Protein Structure Database | ||||||
| SWISS-MODEL Database | ||||||
| Experimental Structures of This DT | ||||||
| PDB ID | Scanning Method | Resolution | Expression System | Details | Ref | |
| 5LLM | X-ray | 3.25 Å | Homo sapiens | [1] | ||
| Structure | ||||||
| Click to Save PDB File in TXT Format | ||||||
| Corresponding chain | A | |||||
| Sequence Length | 158-230 | Mutation | Yes | |||
| 5LLU | X-ray | 3.32 Å | Homo sapiens | [1] | ||
| Structure | ||||||
| Click to Save PDB File in TXT Format | ||||||
| Corresponding chain | A | |||||
| Sequence Length | 158-230 | Mutation | No | |||
| 5LM4 | X-ray | 3.1 Å | Homo sapiens | [1] | ||
| Structure | ||||||
| Click to Save PDB File in TXT Format | ||||||
| Corresponding chain | A | |||||
| Sequence Length | 158-230 | Mutation | Yes | |||
| 5MJU | X-ray | 3.71 Å | Homo sapiens | [1] | ||
| Structure | ||||||
| Click to Save PDB File in TXT Format | ||||||
| Corresponding chain | A | |||||
| Sequence Length | 158-230 | Mutation | Yes | |||
| 6GCT | EM | 3.85 Å | Komagataella pastoris | [2] | ||
| Structure | ||||||
| Click to Save PDB File in TXT Format | ||||||
| Corresponding chain | A/B/C | |||||
| Sequence Length | 1-541 | Mutation | No | |||
| 6MP6 | EM | 3.54 Å | Homo sapiens | [3] | ||
| Structure | ||||||
| Click to Save PDB File in TXT Format | ||||||
| Corresponding chain | A/B/C | |||||
| Sequence Length | 1-541 | Mutation | No | |||
| 6MPB | EM | 3.84 Å | Homo sapiens | [3] | ||
| Structure | ||||||
| Click to Save PDB File in TXT Format | ||||||
| Corresponding chain | A/B/C | |||||
| Sequence Length | 1-541 | Mutation | No | |||
| 6RVX | EM | 3.61 Å | Komagataella pastoris | [4] | ||
| Structure | ||||||
| Click to Save PDB File in TXT Format | ||||||
| Corresponding chain | A/B/C | |||||
| Sequence Length | 1-541 | Mutation | Yes | |||
| References | ||||||
| 1 | Structure and allosteric inhibition of excitatory amino acid transporter 1. Nature. 2017 Apr 27;544(7651):446-451. | |||||
| 2 | Cryo-EM structure of the human neutral amino acid transporter ASCT2. Nat Struct Mol Biol. 2018 Jun;25(6):515-521. | |||||
| 3 | Cryo-EM structures of the human glutamine transporter SLC1A5 (ASCT2) in the outward-facing conformation. Elife. 2019 Oct 3;8:e48120. | |||||
| 4 | A one-gate elevator mechanism for the human neutral amino acid transporter ASCT2. Nat Commun. 2019 Jul 31;10(1):3427. | |||||
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