Detail Information of Epigenetic Regulations

General Information of Drug Transporter (DT)
DT ID DTD0158 Transporter Info
Gene Name SLC23A1
Transporter Name Sodium-dependent vitamin C transporter 1
Gene ID
9963
UniProt ID
Q9UHI7
Epigenetic Regulations of This DT (EGR)

Histone acetylation

  Colon

            1 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon 1

 Hypoacetylation of SLC23A1 in colon (compare with jejunum tissue of human) [ 1 ]

Location

 Promoter

Epigenetic Type

 Histone acetylation Experiment Method Chromatin immunoprecipitation

Related Molecular Changes

 Down regulation of SLC23A1 Experiment Method RT-qPCR

Studied Phenotype

 Colon

Experimental Material

 Patients samples of human

Additional Notes

 Lower levels of H3 acethylation of lysine 9 and lower gene expression was observed in the SLC23A1 promoter in the colon.

Histone trimethylation

  Colon

            1 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon 1

 Lower level of histone trimethylation of SLC23A1 in colon (compare with jejunum tissue of human) [ 1 ]

Location

 Promoter

Epigenetic Type

 Histone trimethylation Experiment Method Chromatin immunoprecipitation

Related Molecular Changes

 Down regulation of SLC23A1 Experiment Method RT-qPCR

Studied Phenotype

 Colon

Experimental Material

 Patients samples of human

Additional Notes

 Lower levels of H3 trimethylation of lysine 4 and lower gene expression was observed in the SLC23A1 promoter in the colon.

microRNA

  Unclear Phenotype

          29 Epigenetic Phenomena Related to This Phenotype Click to Show/Hide the Full List

  Epigenetic Phenomenon 1

 miR-1179 directly targets SLC23A1 [ 2 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-1179 miRNA Mature ID miR-1179

miRNA Sequence

 AAGCAUUCUUUCAUUGGUUGG

miRNA Target Type

 Direct

Experimental Material

 Multiple cell lines of human

  Epigenetic Phenomenon 2

 miR-1185 directly targets SLC23A1 [ 2 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-1185 miRNA Mature ID miR-1185-5p

miRNA Sequence

 AGAGGAUACCCUUUGUAUGUU

miRNA Target Type

 Direct

Experimental Material

 Multiple cell lines of human

  Epigenetic Phenomenon 3

 miR-1224 directly targets SLC23A1 [ 2 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-1224 miRNA Mature ID miR-1224-5p

miRNA Sequence

 GUGAGGACUCGGGAGGUGG

miRNA Target Type

 Direct

Experimental Material

 Multiple cell lines of human

  Epigenetic Phenomenon 4

 miR-140 directly targets SLC23A1 [ 3 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-140 miRNA Mature ID miR-140-3p

miRNA Sequence

 UACCACAGGGUAGAACCACGG

miRNA Target Type

 Direct

Experimental Material

 Multiple cell lines of human

  Epigenetic Phenomenon 5

 miR-203a directly targets SLC23A1 [ 2 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-203a miRNA Mature ID miR-203a-3p

miRNA Sequence

 GUGAAAUGUUUAGGACCACUAG

miRNA Target Type

 Direct

Experimental Material

 Multiple cell lines of human

  Epigenetic Phenomenon 6

 miR-224 directly targets SLC23A1 [ 4 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-224 miRNA Mature ID miR-224-3p

miRNA Sequence

 AAAAUGGUGCCCUAGUGACUACA

miRNA Target Type

 Direct

Experimental Material

 Human embryonic kidney 293 cells (HEK293)

  Epigenetic Phenomenon 7

 miR-3605 directly targets SLC23A1 [ 2 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-3605 miRNA Mature ID miR-3605-5p

miRNA Sequence

 UGAGGAUGGAUAGCAAGGAAGCC

miRNA Target Type

 Direct

Experimental Material

 Multiple cell lines of human

  Epigenetic Phenomenon 8

 miR-3649 directly targets SLC23A1 [ 3 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-3649 miRNA Mature ID miR-3649

miRNA Sequence

 AGGGACCUGAGUGUCUAAG

miRNA Target Type

 Direct

Experimental Material

 Multiple cell lines of human

  Epigenetic Phenomenon 9

 miR-3650 directly targets SLC23A1 [ 4 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-3650 miRNA Mature ID miR-3650

miRNA Sequence

 AGGUGUGUCUGUAGAGUCC

miRNA Target Type

 Direct

Experimental Material

 Human embryonic kidney 293 cells (HEK293)

  Epigenetic Phenomenon 10

 miR-3662 directly targets SLC23A1 [ 4 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-3662 miRNA Mature ID miR-3662

miRNA Sequence

 GAAAAUGAUGAGUAGUGACUGAUG

miRNA Target Type

 Direct

Experimental Material

 Human embryonic kidney 293 cells (HEK293)

  Epigenetic Phenomenon 11

 miR-3679 directly targets SLC23A1 [ 2 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-3679 miRNA Mature ID miR-3679-5p

miRNA Sequence

 UGAGGAUAUGGCAGGGAAGGGGA

miRNA Target Type

 Direct

Experimental Material

 Multiple cell lines of human

  Epigenetic Phenomenon 12

 miR-3915 directly targets SLC23A1 [ 2 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-3915 miRNA Mature ID miR-3915

miRNA Sequence

 UUGAGGAAAAGAUGGUCUUAUU

miRNA Target Type

 Direct

Experimental Material

 Multiple cell lines of human

  Epigenetic Phenomenon 13

 miR-4321 directly targets SLC23A1 [ 5 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-4321 miRNA Mature ID miR-4321

miRNA Sequence

 UUAGCGGUGGACCGCCCUGCG

miRNA Target Type

 Direct

Experimental Material

 Human embryonic kidney 293 cells (HEK293)

  Epigenetic Phenomenon 14

 miR-4689 directly targets SLC23A1 [ 2 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-4689 miRNA Mature ID miR-4689

miRNA Sequence

 UUGAGGAGACAUGGUGGGGGCC

miRNA Target Type

 Direct

Experimental Material

 Multiple cell lines of human

  Epigenetic Phenomenon 15

 miR-4781 directly targets SLC23A1 [ 5 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-4781 miRNA Mature ID miR-4781-5p

miRNA Sequence

 UAGCGGGGAUUCCAAUAUUGG

miRNA Target Type

 Direct

Experimental Material

 Human embryonic kidney 293 cells (HEK293)

  Epigenetic Phenomenon 16

 miR-5009 directly targets SLC23A1 [ 4 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-5009 miRNA Mature ID miR-5009-3p

miRNA Sequence

 UCCUAAAUCUGAAAGUCCAAAA

miRNA Target Type

 Direct

Experimental Material

 Human embryonic kidney 293 cells (HEK293)

  Epigenetic Phenomenon 17

 miR-510 directly targets SLC23A1 [ 2 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-510 miRNA Mature ID miR-510-3p

miRNA Sequence

 AUUGAAACCUCUAAGAGUGGA

miRNA Target Type

 Direct

Experimental Material

 Multiple cell lines of human

  Epigenetic Phenomenon 18

 miR-5193 directly targets SLC23A1 [ 5 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-5193 miRNA Mature ID miR-5193

miRNA Sequence

 UCCUCCUCUACCUCAUCCCAGU

miRNA Target Type

 Direct

Experimental Material

 Human embryonic kidney 293 cells (HEK293)

  Epigenetic Phenomenon 19

 miR-522 directly targets SLC23A1 [ 4 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-522 miRNA Mature ID miR-522-3p

miRNA Sequence

 AAAAUGGUUCCCUUUAGAGUGU

miRNA Target Type

 Direct

Experimental Material

 Human embryonic kidney 293 cells (HEK293)

  Epigenetic Phenomenon 20

 miR-526b directly targets SLC23A1 [ 2 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-526b miRNA Mature ID miR-526b-5p

miRNA Sequence

 CUCUUGAGGGAAGCACUUUCUGU

miRNA Target Type

 Direct

Experimental Material

 Multiple cell lines of human

  Epigenetic Phenomenon 21

 miR-562 directly targets SLC23A1 [ 3 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-562 miRNA Mature ID miR-562

miRNA Sequence

 AAAGUAGCUGUACCAUUUGC

miRNA Target Type

 Direct

Experimental Material

 Multiple cell lines of human

  Epigenetic Phenomenon 22

 miR-574 directly targets SLC23A1 [ 4 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-574 miRNA Mature ID miR-574-5p

miRNA Sequence

 UGAGUGUGUGUGUGUGAGUGUGU

miRNA Target Type

 Direct

Experimental Material

 Human embryonic kidney 293 cells (HEK293)

  Epigenetic Phenomenon 23

 miR-660 directly targets SLC23A1 [ 5 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-660 miRNA Mature ID miR-660-3p

miRNA Sequence

 ACCUCCUGUGUGCAUGGAUUA

miRNA Target Type

 Direct

Experimental Material

 Human embryonic kidney 293 cells (HEK293)

  Epigenetic Phenomenon 24

 miR-6791 directly targets SLC23A1 [ 3 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-6791 miRNA Mature ID miR-6791-3p

miRNA Sequence

 UGCCUCCUUGGUCUCCGGCAG

miRNA Target Type

 Direct

Experimental Material

 Multiple cell lines of human

  Epigenetic Phenomenon 25

 miR-6829 directly targets SLC23A1 [ 3 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-6829 miRNA Mature ID miR-6829-3p

miRNA Sequence

 UGCCUCCUCCGUGGCCUCAG

miRNA Target Type

 Direct

Experimental Material

 Multiple cell lines of human

  Epigenetic Phenomenon 26

 miR-6858 directly targets SLC23A1 [ 2 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-6858 miRNA Mature ID miR-6858-5p

miRNA Sequence

 GUGAGGAGGGGCUGGCAGGGAC

miRNA Target Type

 Direct

Experimental Material

 Multiple cell lines of human

  Epigenetic Phenomenon 27

 miR-6867 directly targets SLC23A1 [ 4 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-6867 miRNA Mature ID miR-6867-5p

miRNA Sequence

 UGUGUGUGUAGAGGAAGAAGGGA

miRNA Target Type

 Direct

Experimental Material

 Human embryonic kidney 293 cells (HEK293)

  Epigenetic Phenomenon 28

 miR-6881 directly targets SLC23A1 [ 2 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-6881 miRNA Mature ID miR-6881-3p

miRNA Sequence

 AUCCUCUUUCGUCCUUCCCACU

miRNA Target Type

 Direct

Experimental Material

 Multiple cell lines of human

  Epigenetic Phenomenon 29

 miR-877 directly targets SLC23A1 [ 2 ]

Epigenetic Type

 microRNA Experiment Method PAR-CLIP

miRNA Stemloop ID

 miR-877 miRNA Mature ID miR-877-3p

miRNA Sequence

 UCCUCUUCUCCCUCCUCCCAG

miRNA Target Type

 Direct

Experimental Material

 Multiple cell lines of human

Methylation
References
1 Molecular mechanism(s) involved in differential expression of vitamin C transporters along the intestinal tract. Am J Physiol Gastrointest Liver Physiol. 2017 Apr 1;312(4):G340-G347.
2 The viral and cellular microRNA targetome in lymphoblastoid cell lines. PLoS Pathog. 2012 Jan;8(1):e1002484.
3 In-depth analysis of the interaction of HIV-1 with cellular microRNA biogenesis and effector mechanisms. MBio. 2013 Apr 16;4(2):e000193.
4 Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell. 2010 Apr 2;141(1):129-41.
5 Genome-wide identification of microRNA targets in human ES cells reveals a role for miR-302 in modulating BMP response. Genes Dev. 2011 Oct 15;25(20):2173-86.

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