Crystal Structure of This DT
Crystallisation Method: X-ray
Corresponding Chain: B
Sequence Length: 456-574
Detail: Struture Info
General Information of Drug Transporter (DT) | |||||
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DT ID | DTD0155 Transporter Info | ||||
Gene Name | SLC22B3 | ||||
Protein Name | Synaptic vesicle glycoprotein 2C | ||||
Gene ID | |||||
UniProt ID | |||||
3D Structure |
Crystal Structure of This DT Crystallisation Method: X-ray Corresponding Chain: B Sequence Length: 456-574 Detail: Struture Info |
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Inter-species Structural Differences (ISD) | |||||
Mus musculus (Mouse) | |||||
Gene Name | Sv2c | ||||
UniProt ID | |||||
UniProt Entry | |||||
3D Structure |
Method: Homology modeling Teplate PDB: 5JMC_B Sequence Length: 123 Identity: 97.561% |
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Click to Save PDB File in TXT Format | |||||
Performance | Minimized Score | -176.471 kcal/mol | |||
Ramachandra Favored |
Poor |
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QMEANBrane Quality |
Medium |
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Ramachandran Plot |
Ramz Z Score: -3.54 ± 0.49 Residues in Favored Region: 168 Ramachandran favored: 92.31% Number of Outliers: 3 Ramachandran outliers: 1.65% |
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Click to Save Ramachandran Plot in PNG Format | |||||
Local Quality |
QMEANBrane Score: 0.64 |
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Click to Save Local Quality Plot in PNG Format | |||||
Rattus norvegicus (Rat) | |||||
Gene Name | Sv2c | ||||
UniProt ID | |||||
UniProt Entry | |||||
3D Structure |
Method: Homology modeling Teplate PDB: 5JMC_B Sequence Length: 123 Identity: 100% |
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Click to Save PDB File in TXT Format | |||||
Performance | Minimized Score | -370.53 kcal/mol | |||
Ramachandra Favored |
Excellent |
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QMEANBrane Quality |
Medium |
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Ramachandran Plot |
Ramz Z Score: 0.23 ± 0.77 Residues in Favored Region: 120 Ramachandran favored: 99.17% Number of Outliers: 0 Ramachandran outliers: 0.00% |
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Click to Save Ramachandran Plot in PNG Format | |||||
Local Quality |
QMEANBrane Score: 0.64 |
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Click to Save Local Quality Plot in PNG Format | |||||
Experimental Structures of This Model Oganism | |||||
PDB ID | Scanning Method | Resolution | Expression System | Details | Ref |
5JMC | X-ray | 2.64 Å | Escherichia coli | [ 1] | |
Structure | |||||
Click to Save PDB File in TXT Format | |||||
Corresponding chain | B/D/F/H | ||||
Sequence Length | 455-577 | Mutation | Yes | ||
References | |||||
1 | N-linked glycosylation of SV2 is required for binding and uptake of botulinum neurotoxin A. Nat Struct Mol Biol. 2016 Jul;23(7):656-62. | ||||
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