General Information of Drug Transporter (DT)
DT ID DTD0155 Transporter Info
Gene Name SLC22B3
Protein Name Synaptic vesicle glycoprotein 2C
Gene ID
22987
UniProt ID
Q496J9
3D Structure

Crystal Structure of This DT

Crystallisation Method: X-ray

PDB ID: 5MOY

Corresponding Chain: B

Sequence Length: 456-574

Detail: Struture Info

Inter-species Structural Differences (ISD)
Mus musculus (Mouse)
        Gene Name Sv2c
        UniProt ID
Q69ZS6
        UniProt Entry
SV2C_MOUSE
        3D Structure

Method: Homology modeling

Teplate PDB: 5JMC_B

Sequence Length: 123

Identity: 97.561%

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        Performance Minimized Score -176.471 kcal/mol
Ramachandra Favored

Poor

QMEANBrane Quality

Medium

        Ramachandran Plot

Ramz Z Score: -3.54 ± 0.49

Residues in Favored Region: 168

Ramachandran favored: 92.31%

Number of Outliers: 3

Ramachandran outliers: 1.65%

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        Local Quality

QMEANBrane Score: 0.64

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Rattus norvegicus (Rat)
        Gene Name Sv2c
        UniProt ID
Q9Z2I6
        UniProt Entry
SV2C_RAT
        3D Structure

Method: Homology modeling

Teplate PDB: 5JMC_B

Sequence Length: 123

Identity: 100%

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        Performance Minimized Score -370.53 kcal/mol
Ramachandra Favored

Excellent

QMEANBrane Quality

Medium

        Ramachandran Plot

Ramz Z Score: 0.23 ± 0.77

Residues in Favored Region: 120

Ramachandran favored: 99.17%

Number of Outliers: 0

Ramachandran outliers: 0.00%

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        Local Quality

QMEANBrane Score: 0.64

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        Experimental Structures of This Model Oganism
                PDB ID Scanning Method Resolution Expression System Details Ref
                5JMC X-ray 2.64 Å Escherichia coli
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[ 1]
Structure
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Corresponding chain B/D/F/H
Sequence Length 455-577 Mutation Yes
References
1 N-linked glycosylation of SV2 is required for binding and uptake of botulinum neurotoxin A. Nat Struct Mol Biol. 2016 Jul;23(7):656-62.

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