Detail Information of Mutation-induced Spatial Variation
| General Information of Drug Transporter (DT) | |||||
|---|---|---|---|---|---|
| DT ID | DTD0036 Transporter Info | ||||
| Gene Name | ABCA1 | ||||
| Transporter Name | ATP-binding cassette sub-family A member 1 | ||||
| Gene ID | |||||
| UniProt ID | |||||
| Mutation-induced Spatial Variation (MSV) of This DT | |||||
| SNP ID | |||||
| Variation Type | R/K | ||||
| Site of GPD | chr9:104858586 (GRCh38.p12) | ||||
| Allele(s) in dbSNP | C>T | ||||
| Minor Allele Frequency | T=0.4397/2202 | ||||
| GPD Details | GPD Info | ||||
| Structure Details | |||||
| Modeling Method | Homology modeling | ||||
| Template PDB | 5XJY_A | Identity | 99.956% | ||
| Model Performance | Minimized Score | -2236.312 kcal/mol | |||
| Ramachandra Favored |
Poor |
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| QMEANBrane Quality |
Medium |
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| Ramachandran Plot |
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Ramz Z Score | -1.87 ± 0.16 | ||||
| Residues in Favored Region | 2084 | Percentage of Favorable Residues | 92.25% | ||
| Number of Outliers | 49 | Ramachandran outliers | 2.17% | ||
| Local Quality |
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| Click to Save Local Quality Plot in PNG Format | |||||
| QMEANBrane Score | 0.7 | ||||
| SNP ID | |||||
| Variation Type | R/T | ||||
| Site of GPD | chr9:104858586 (GRCh38.p12) | ||||
| Allele(s) in dbSNP | C>T | ||||
| Minor Allele Frequency | T=0.4397/2202 | ||||
| GPD Details | GPD Info | ||||
| Structure Details | |||||
| Modeling Method | Homology modeling | ||||
| Template PDB | 5XJY_A | Identity | 99.956% | ||
| Model Performance | Minimized Score | -2139.65 kcal/mol | |||
| Ramachandra Favored |
Poor |
||||
| QMEANBrane Quality |
Medium |
||||
| Ramachandran Plot |
|
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Ramz Z Score | -1.95 ± 0.16 | ||||
| Residues in Favored Region | 2081 | Percentage of Favorable Residues | 92.12% | ||
| Number of Outliers | 38 | Ramachandran outliers | 1.68% | ||
| Local Quality |
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| Click to Save Local Quality Plot in PNG Format | |||||
| QMEANBrane Score | 0.69 | ||||
| SNP ID | |||||
| Variation Type | K/R | ||||
| Site of GPD | chr9:104800523 (GRCh38.p12) | ||||
| Allele(s) in dbSNP | T>C | ||||
| Minor Allele Frequency | T=0.4617/2312 | ||||
| GPD Details | GPD Info | ||||
| Structure Details | |||||
| Modeling Method | Homology modeling | ||||
| Template PDB | 5XJY_A | Identity | 99.956% | ||
| Model Performance | Minimized Score | -2062.904 kcal/mol | |||
| Ramachandra Favored |
Poor |
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| QMEANBrane Quality |
Medium |
||||
| Ramachandran Plot |
|
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Ramz Z Score | -1.86 ± 0.17 | ||||
| Residues in Favored Region | 2085 | Percentage of Favorable Residues | 92.30% | ||
| Number of Outliers | 44 | Ramachandran outliers | 1.95% | ||
| Local Quality |
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| Click to Save Local Quality Plot in PNG Format | |||||
| QMEANBrane Score | 0.68 | ||||
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