Detail Information of Mutation-induced Spatial Variation

General Information of Drug Transporter (DT)
DT ID DTD0060 Transporter Info
Gene Name ABCC7
Transporter Name Cystic fibrosis transmembrane conductance regulator
Gene ID
1080
UniProt ID
P13569
Mutation-induced Structural Variation (MSV) of This DT
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 		PDB ID
6O1V
Expression System Homo sapiens
Method EM
Resolution 3.2 Å
Corresponding chain A
Mutation Site(s) E1371Q [1]
Structure Details
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Modeling Method EM
Publication year 2019
Closely Related Crystal Structure of This MSV
PDB ID Scanning Method Resolution Mutation Sites Details Ref
1XMI X-ray 2.25 Å F42S; F121A; H280R
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[2]
Structure
Expression System Escherichia coli
Corresponding chain A/B/C/D/E
Sequence Length 389-678 Mutation Yes
1XMJ X-ray 2.3 Å F22L; F42S; F46L; S162E; G164Q; A167K; L279R
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[2]
Structure
Expression System Escherichia coli
Corresponding chain A
Sequence Length 389-677 Mutation Yes
2BBO X-ray 2.55 Å F22L; F42S; F46L; S162E; G164Q; A167K; L279R
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[3]
Structure
Expression System Escherichia coli
Corresponding chain A
Sequence Length 389-678 Mutation Yes
2BBS X-ray 2.05 Å F42S; F107N; Q165R
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[3]
Structure
Expression System Escherichia coli
Corresponding chain A/B
Sequence Length 389-677 Mutation Yes
2BBT X-ray 2.3 Å F107N; L245R
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[3]
Structure
Expression System Escherichia coli
Corresponding chain A/B
Sequence Length 389-678 Mutation Yes
2PZE X-ray 1.7 Å T53M
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[4]
Structure
Expression System Escherichia coli
Corresponding chain A/B
Sequence Length 387-646 Mutation Yes
2PZF X-ray 2 Å T53M
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[4]
Structure
Expression System Escherichia coli BL21(DE3)
Corresponding chain A/B
Sequence Length 387-646 Mutation Yes
2PZG X-ray 1.8 Å T65M
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[4]
Structure
Expression System Escherichia coli
Corresponding chain A/B
Sequence Length 375-646 Mutation Yes
References
1 Structural identification of a hotspot on CFTR for potentiation. Science. 2019 Jun 21;364(6446):1184-1188.
2 Impact of the deltaF508 mutation in first nucleotide-binding domain of human cystic fibrosis transmembrane conductance regulator on domain folding and structure. J Biol Chem. 2005 Jan 14;280(2):1346-53.
3 Structure and dynamics of NBD1 from CFTR characterized using crystallography and hydrogen/deuterium exchange mass spectrometry. J Mol Biol. 2010 Feb 19;396(2):406-30.
4 Structures of a minimal human CFTR first nucleotide-binding domain as a monomer, head-to-tail homodimer, and pathogenic mutant. Protein Eng Des Sel. 2010 May;23(5):375-84.
5 Binding screen for cystic fibrosis transmembrane conductance regulator correctors finds new chemical matter and yields insights into cystic fibrosis therapeutic strategy. Protein Sci. 2016 Feb;25(2):360-73.
6 Ligand binding to a remote site thermodynamically corrects the F508del mutation in the human cystic fibrosis transmembrane conductance regulator. J Biol Chem. 2018 Nov 16;293(46):17685-17704.
7 Molecular structure of the ATP-bound, phosphorylated human CFTR. Proc Natl Acad Sci U S A. 2018 Dec 11;115(50):12757-12762.
8 Domain-interface dynamics of CFTR revealed by stabilizing nanobodies. Nat Commun. 2019 Jun 14;10(1):2636.
9 RCSB PDB: Crystal structure of human NBD2 complexed with N6-Phenylethyl-ATP (P-ATP)
10 RCSB PDB: Thermodynamic correction of F508del-CFTR by ligand binding to a remote site in the mutated domain
11 RCSB PDB: Thermodynamic correction of F508del-CFTR by ligand binding to a remote site in the mutated domain
12 RCSB PDB: Thermodynamic correction of F508del-CFTR by ligand binding to a remote site in the mutated domain
13 RCSB PDB: Thermodynamic correction of F508del-CFTR by ligand binding to a remote site in the mutated domain
14 RCSB PDB: Thermodynamic correction of F508del-CFTR by ligand binding to a remote site in the mutated domain
15 RCSB PDB: Thermodynamic correction of F508del-CFTR by ligand binding to a remote site in the mutated domain
16 RCSB PDB: Thermodynamic correction of F508del-CFTR by ligand binding to a remote site in the mutated domain
17 RCSB PDB: Thermodynamic correction of F508del-CFTR by ligand binding to a remote site in the mutated domain
18 RCSB PDB: Thermodynamic correction of F508del-CFTR by ligand binding to a remote site in the mutated domain
19 RCSB PDB: Thermodynamic correction of F508del-CFTR by ligand binding to a remote site in the mutated domain
20 RCSB PDB: A thermodynamically stabilized form of the second nucleotide binding domain from human CFTR shows a catalytically inactive conformation

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