Detail Information of Mutation-induced Spatial Variation
General Information of Drug Transporter (DT) | |||||
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DT ID | DTD0526 Transporter Info | ||||
Gene Name | SCN1A | ||||
Transporter Name | Voltage-gated sodium channel alpha Nav1.1 | ||||
Gene ID | |||||
UniProt ID | |||||
Mutation-induced Spatial Variation (MSV) of This DT | |||||
SNP ID | |||||
Variation Type | A/P | ||||
Site of GPD | chr2:166036278 (GRCh38.p12) | ||||
Allele(s) in dbSNP | C>T | ||||
Minor Allele Frequency | C=0.2115/1059 | ||||
GPD Details | GPD Info | ||||
Structure Details | |||||
Modeling Method | Homology modeling | ||||
Template PDB | 6J8E_A | Identity | 86.203% | ||
Model Performance | Minimized Score | -3262.452 kcal/mol | |||
Ramachandra Favored |
Poor |
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QMEANBrane Quality |
Medium |
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Ramachandran Plot | |||||
Click to Save Ramachandran Plot in PNG Format | |||||
Ramz Z Score | -1.31 ± 0.18 | ||||
Residues in Favored Region | 1903 | Percentage of Favorable Residues | 94.82% | ||
Number of Outliers | 24 | Ramachandran outliers | 1.20% | ||
Local Quality | |||||
Click to Save Local Quality Plot in PNG Format | |||||
QMEANBrane Score | 0.71 | ||||
SNP ID | |||||
Variation Type | A/T | ||||
Site of GPD | chr2:166036278 (GRCh38.p12) | ||||
Allele(s) in dbSNP | C>T | ||||
Minor Allele Frequency | C=0.2115/1059 | ||||
GPD Details | GPD Info | ||||
Structure Details | |||||
Modeling Method | Homology modeling | ||||
Template PDB | 6J8E_A | Identity | 86.253% | ||
Model Performance | Minimized Score | -3279.657 kcal/mol | |||
Ramachandra Favored |
Medium |
||||
QMEANBrane Quality |
Medium |
||||
Ramachandran Plot | |||||
Click to Save Ramachandran Plot in PNG Format | |||||
Ramz Z Score | -1.5 ± 0.17 | ||||
Residues in Favored Region | 1916 | Percentage of Favorable Residues | 95.47% | ||
Number of Outliers | 24 | Ramachandran outliers | 1.20% | ||
Local Quality | |||||
Click to Save Local Quality Plot in PNG Format | |||||
QMEANBrane Score | 0.71 | ||||
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