Detail Information of DT Wildtype Structure
| General Information of Drug Transporter (DT) | ||||||
|---|---|---|---|---|---|---|
| DT ID | DTD0529 Transporter Info | |||||
| Gene Name | SCN9A | |||||
| Transporter Name | Voltage-gated sodium channel alpha Nav1.7 | |||||
| Gene ID | ||||||
| UniProt ID | ||||||
| Modelled Structures of This DT | ||||||
| Click to Save PDB File in TXT Format | ||||||
| Detail Information of Structural Model | ||||||
| Method | Homology modeling | |||||
| Template PDB | 6J8G_A_A | Identity | 99.33% | |||
| Performance | Minimized Score | -3418.806 kcal/mol | ||||
| Ramachandra Favored |
Medium |
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| QMEANBrane Quality |
Medium |
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| Ramachandran Plot |
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| Click to Save Ramachandran Plot in PNG Format | ||||||
| Ramz Z Score | -0.67 ± 0.18 | |||||
| Residues in Favored Region | 1604 | Ramachandran favored | 97.04% | |||
| Number of Outliers | 10 | Ramachandran outliers | 0.60% | |||
| Local Quality |
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| Click to Save Local Quality Plot in PNG Format | ||||||
| QMEANBrane Score | 0.77 | |||||
| AlphaFold Protein Structure Database | ||||||
| SWISS-MODEL Database | ||||||
| Experimental Structures of This DT | ||||||
| PDB ID | Scanning Method | Resolution | Expression System | Details | Ref | |
| 5EK0 | X-ray | 3.53 Å | Trichoplusia ni | [1] | ||
| Structure | ||||||
| Click to Save PDB File in TXT Format | ||||||
| Corresponding chain | A/B/C/D | |||||
| Sequence Length | 1527-1559; 1581-1622 | Mutation | No? | |||
| 6J8G | EM | 3.2 Å | Homo sapiens | [2] | ||
| Structure | ||||||
| Click to Save PDB File in TXT Format | ||||||
| Corresponding chain | A | |||||
| Sequence Length | 1-1988 | Mutation | Yes | |||
| 6J8H | EM | 3.2 Å | Homo sapiens | [2] | ||
| Structure | ||||||
| Click to Save PDB File in TXT Format | ||||||
| Corresponding chain | A | |||||
| Sequence Length | 1-1988 | Mutation | Yes | |||
| 6J8I | EM | 3.2 Å | Homo sapiens | [2] | ||
| Structure | ||||||
| Click to Save PDB File in TXT Format | ||||||
| Corresponding chain | A | |||||
| Sequence Length | 1-1988 | Mutation | Yes | |||
| 6J8J | EM | 3.2 Å | Homo sapiens | [2] | ||
| Structure | ||||||
| Click to Save PDB File in TXT Format | ||||||
| Corresponding chain | A | |||||
| Sequence Length | 1-1988 | Mutation | Yes | |||
| 6N4Q | EM | 3.6 Å | Trichoplusia ni | [3] | ||
| Structure | ||||||
| Click to Save PDB File in TXT Format | ||||||
| Corresponding chain | A/B/C/D | |||||
| Sequence Length | 758-788; 813-843 | Mutation | No? | |||
| 6N4R | EM | 4.2 Å | Trichoplusia ni | [3] | ||
| Structure | ||||||
| Click to Save PDB File in TXT Format | ||||||
| Corresponding chain | A/B/C/D | |||||
| Sequence Length | 758-788; 813-843 | Mutation | No | |||
| 6NT3 | EM | 3.4 Å | Homo sapiens | [4] | ||
| Structure | ||||||
| Click to Save PDB File in TXT Format | ||||||
| Corresponding chain | A | |||||
| Sequence Length | 257-275; 1501-1631 | Mutation | No | |||
| References | ||||||
| 1 | Structural basis of Nav1.7 inhibition by an isoform-selective small-molecule antagonist. Science. 2015 Dec 18;350(6267):aac5464. | |||||
| 2 | Structures of human Na(v)1.7 channel in complex with auxiliary subunits and animal toxins. Science. 2019 Mar 22;363(6433):1303-1308. | |||||
| 3 | Structural Basis of Nav1.7 Inhibition by a Gating-Modifier Spider Toxin. Cell. 2019 Feb 7;176(4):702-715.e14. | |||||
| 4 | RCSB PDB: Cryo-EM structures of a human-cockroach hybrid Nav channel in the presence and absence of the alpha-scorpion toxin AaH2. | |||||
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