Detail Information of DT Wildtype Structure
| General Information of Drug Transporter (DT) | ||||||
|---|---|---|---|---|---|---|
| DT ID | DTD0533 Transporter Info | |||||
| Gene Name | ATP7B | |||||
| Transporter Name | Copper-transporting ATPase 2 | |||||
| Gene ID | ||||||
| UniProt ID | ||||||
| Modelled Structures of This DT | ||||||
| Click to Save PDB File in TXT Format | ||||||
| Detail Information of Structural Model | ||||||
| Method | Homology modeling | |||||
| Template PDB | 3J08_A | Identity | 41.168% | |||
| Performance | Minimized Score | -1415.33 kcal/mol | ||||
| Ramachandra Favored |
Poor |
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| QMEANBrane Quality |
Medium |
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| Ramachandran Plot |
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| Click to Save Ramachandran Plot in PNG Format | ||||||
| Ramz Z Score | -1.06 ± 0.3 | |||||
| Residues in Favored Region | 649 | Ramachandran favored | 94.47% | |||
| Number of Outliers | 6 | Ramachandran outliers | 0.87% | |||
| Local Quality |
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| Click to Save Local Quality Plot in PNG Format | ||||||
| QMEANBrane Score | 0.76 | |||||
| AlphaFold Protein Structure Database | ||||||
| SWISS-MODEL Database | ||||||
| Experimental Structures of This DT | ||||||
| PDB ID | Scanning Method | Resolution | Expression System | Details | Ref | |
| 2ARF | NMR | N.A. | Escherichia coli BL21 | [1] | ||
| Structure | ||||||
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| 2EW9 | NMR | N.A. | Escherichia coli | [2] | ||
| Structure | ||||||
| Click to Save PDB File in TXT Format | ||||||
| 2KOY | NMR | N.A. | Escherichia coli | [3] | ||
| Structure | ||||||
| Click to Save PDB File in TXT Format | ||||||
| 2LQB | NMR | N.A. | Escherichia coli BL21(DE3) | [4] | ||
| Structure | ||||||
| Click to Save PDB File in TXT Format | ||||||
| 2N7Y | NMR | N.A. | Escherichia coli BL21(DE3) | [5] | ||
| Structure | ||||||
| Click to Save PDB File in TXT Format | ||||||
| 2ROP | NMR | N.A. | Escherichia coli | [6] | ||
| Structure | ||||||
| Click to Save PDB File in TXT Format | ||||||
| 6A71 | X-ray | 1.6 Å | Escherichia coli | [7] | ||
| Structure | ||||||
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| Corresponding chain | A/B | |||||
| Sequence Length | 357-428 | Mutation | No | |||
| 6A72 | X-ray | 2.1 Å | Escherichia coli | [7] | ||
| Structure | ||||||
| Click to Save PDB File in TXT Format | ||||||
| Corresponding chain | A/B | |||||
| Sequence Length | 357-428 | Mutation | No | |||
| References | ||||||
| 1 | Solution structure of the N-domain of Wilson disease protein: distinct nucleotide-binding environment and effects of disease mutations. Proc Natl Acad Sci U S A. 2006 Apr 4;103(14):5302-7. | |||||
| 2 | Structure of human Wilson protein domains 5 and 6 and their interplay with domain 4 and the copper chaperone HAH1 in copper uptake. Proc Natl Acad Sci U S A. 2006 Apr 11;103(15):5729-34. | |||||
| 3 | Difference in stability of the N-domain underlies distinct intracellular properties of the E1064A and H1069Q mutants of copper-transporting ATPase ATP7B. J Biol Chem. 2011 May 6;286(18):16355-62. | |||||
| 4 | Copper chaperone Atox1 interacts with the metal-binding domain of Wilson's disease protein in cisplatin detoxification. Biochem J. 2013 Aug 15;454(1):147-56. | |||||
| 5 | The Structure of Metal Binding Domain 1 of the Copper Transporter ATP7B Reveals Mechanism of a Singular Wilson Disease Mutation. Sci Rep. 2018 Jan 12;8(1):581. | |||||
| 6 | Metal binding domains 3 and 4 of the Wilson disease protein: solution structure and interaction with the copper(I) chaperone HAH1. Biochemistry. 2008 Jul 15;47(28):7423-9. | |||||
| 7 | Tetrathiomolybdate induces dimerization of the metal-binding domain of ATPase and inhibits platination of the protein. Nat Commun. 2019 Jan 14;10(1):186. | |||||
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