Modelled Stucture
Method: Homology modeling
Teplate PDB: 3US9_A
Identity: 87.888%
Minimized Score: -743.553
Detail: Structure Info
Detail Information of Inter-species Structural Difference
| General Information of Drug Transporter (DT) | |||||
|---|---|---|---|---|---|
| DT ID | DTD0477 Transporter Info | ||||
| Gene Name | SLC8A1 | ||||
| Protein Name | Sodium/calcium exchanger 1 | ||||
| Gene ID | |||||
| UniProt ID | |||||
| 3D Structure |
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| Inter-species Structural Differences (ISD) | |||||
| Bos taurus (Bovine) | |||||
| Gene Name | SLC8A1 | ||||
| UniProt ID | |||||
| UniProt Entry | |||||
| 3D Structure |
Method: Homology modeling Teplate PDB: 3US9_A Sequence Length: 322 Identity: 87.267% |
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| Click to Save PDB File in TXT Format | |||||
| Performance | Minimized Score | -739.825 kcal/mol | |||
| Ramachandra Favored |
Poor |
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| QMEANBrane Quality |
Medium |
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| Ramachandran Plot |
Ramz Z Score: -0.02 ± 0.44 Residues in Favored Region: 302 Ramachandran favored: 94.38% Number of Outliers: 5 Ramachandran outliers: 1.56% |
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Local Quality |
QMEANBrane Score: 0.75 |
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| Click to Save Local Quality Plot in PNG Format | |||||
| Inter-species Structural Differences (ISD) | |||||
| Cavia porcellus (Guinea pig) | |||||
| Gene Name | SLC8A1 | ||||
| UniProt ID | |||||
| UniProt Entry | |||||
| 3D Structure |
Method: Homology modeling Teplate PDB: 3US9_A Sequence Length: 322 Identity: 87.578% |
||||
| Click to Save PDB File in TXT Format | |||||
| Performance | Minimized Score | -745.341 kcal/mol | |||
| Ramachandra Favored |
Medium |
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| QMEANBrane Quality |
Medium |
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| Ramachandran Plot |
Ramz Z Score: -0.04 ± 0.46 Residues in Favored Region: 308 Ramachandran favored: 96.25% Number of Outliers: 3 Ramachandran outliers: 0.94% |
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Local Quality |
QMEANBrane Score: 0.75 |
||||
| Click to Save Local Quality Plot in PNG Format | |||||
| References | |||||
| 1 | Ca2+ regulation in the Na+/Ca2+ exchanger involves two markedly different Ca2+ sensors. Mol Cell. 2006 Apr 7;22(1):15-25. | ||||
| 2 | The crystal structure of the primary Ca2+ sensor of the Na+/Ca2+ exchanger reveals a novel Ca2+ binding motif. J Biol Chem. 2006 Aug 4;281(31):21577-21581. | ||||
| 3 | The second Ca2+-binding domain of the Na+ Ca2+ exchanger is essential for regulation: crystal structures and mutational analysis. Proc Natl Acad Sci U S A. 2007 Nov 20;104(47):18467-72. | ||||
| 4 | Structure and functional analysis of a Ca2+ sensor mutant of the Na+/Ca2+ exchanger. J Biol Chem. 2009 May 29;284(22):14688-92. | ||||
| 5 | A common Ca2+-driven interdomain module governs eukaryotic NCX regulation. PLoS One. 2012;7(6):e39985. | ||||
| 6 | The Intracellular Loop of the Na(+)/Ca(2+) Exchanger Contains an "Awareness Ribbon"-Shaped Two-Helix Bundle Domain. Biochemistry. 2018 Aug 28;57(34):5096-5104. | ||||
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