Modelled Stucture
Method: Homology modeling
Teplate PDB: 6JPA_A
Identity: 49.337%
Minimized Score: -1477.492
Detail: Structure Info
Detail Information of Inter-species Structural Difference
| General Information of Drug Transporter (DT) | |||||
|---|---|---|---|---|---|
| DT ID | DTD0518 Transporter Info | ||||
| Gene Name | CACNA1A | ||||
| Protein Name | Voltage-gated calcium channel alpha Cav2.1 | ||||
| Gene ID | |||||
| UniProt ID | |||||
| 3D Structure |
|
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| Inter-species Structural Differences (ISD) | |||||
| Mus musculus (Mouse) | |||||
| Gene Name | Cacna1a | ||||
| UniProt ID | |||||
| UniProt Entry | |||||
| 3D Structure |
Method: Homology modeling Teplate PDB: 5GJV_A Sequence Length: 818 Identity: 45.539% |
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| Click to Save PDB File in TXT Format | |||||
| Performance | Minimized Score | -1404.569 kcal/mol | |||
| Ramachandra Favored |
Poor |
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| QMEANBrane Quality |
Medium |
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| Ramachandran Plot |
Ramz Z Score: -2.31 ± 0.26 Residues in Favored Region: 762 Ramachandran favored: 93.38% Number of Outliers: 16 Ramachandran outliers: 1.96% |
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Local Quality |
QMEANBrane Score: 0.76 |
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| Click to Save Local Quality Plot in PNG Format | |||||
| Inter-species Structural Differences (ISD) | |||||
| Rattus norvegicus (Rat) | |||||
| Gene Name | Cacna1a | ||||
| UniProt ID | |||||
| UniProt Entry | |||||
| 3D Structure |
Method: Homology modeling Teplate PDB: 5GJV_A Sequence Length: 818 Identity: 45.771% |
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| Click to Save PDB File in TXT Format | |||||
| Performance | Minimized Score | -1419.97 kcal/mol | |||
| Ramachandra Favored |
Poor |
||||
| QMEANBrane Quality |
Medium |
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| Ramachandran Plot |
Ramz Z Score: -1.62 ± 0.28 Residues in Favored Region: 762 Ramachandran favored: 93.38% Number of Outliers: 11 Ramachandran outliers: 1.35% |
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Local Quality |
QMEANBrane Score: 0.76 |
||||
| Click to Save Local Quality Plot in PNG Format | |||||
| Inter-species Structural Differences (ISD) | |||||
| Oryctolagus cuniculus (Rabbit) | |||||
| Gene Name | CACNA1A | ||||
| UniProt ID | |||||
| UniProt Entry | |||||
| 3D Structure |
Method: Homology modeling Teplate PDB: 5GJV_A Sequence Length: 798 Identity: 45.53% |
||||
| Click to Save PDB File in TXT Format | |||||
| Performance | Minimized Score | -1547.65 kcal/mol | |||
| Ramachandra Favored |
Poor |
||||
| QMEANBrane Quality |
Medium |
||||
| Ramachandran Plot |
Ramz Z Score: -1.63 ± 0.27 Residues in Favored Region: 753 Ramachandran favored: 94.60% Number of Outliers: 9 Ramachandran outliers: 1.13% |
||||
| Click to Save Ramachandran Plot in PNG Format | |||||
| Local Quality |
QMEANBrane Score: 0.76 |
||||
| Click to Save Local Quality Plot in PNG Format | |||||
| Experimental Structures of This Model Oganism | |||||
| PDB ID | Scanning Method | Resolution | Expression System | Details | Ref |
| 3DVM | X-ray | 2.6 Å | Escherichia coli | [ 1] | |
| Structure | |||||
| Click to Save PDB File in TXT Format | |||||
| Corresponding chain | B | ||||
| Sequence Length | 1963-1982 | Mutation | No | ||
| References | |||||
| 1 | Structures of CaV2 Ca2+/CaM-IQ domain complexes reveal binding modes that underlie calcium-dependent inactivation and facilitation. Structure. 2008 Oct 8;16(10):1455-67. | ||||
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