Crystal Structure of This DT
Crystallisation Method: EM
Corresponding Chain: A
Sequence Length: 1-1836
Detail: Struture Info
Detail Information of Inter-species Structural Difference
| General Information of Drug Transporter (DT) | |||||
|---|---|---|---|---|---|
| DT ID | DTD0527 Transporter Info | ||||
| Gene Name | SCN4A | ||||
| Protein Name | Voltage-gated sodium channel alpha Nav1.4 | ||||
| Gene ID | |||||
| UniProt ID | |||||
| 3D Structure |
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| Inter-species Structural Differences (ISD) | |||||
| Mus musculus (Mouse) | |||||
| Gene Name | Scn4a | ||||
| UniProt ID | |||||
| UniProt Entry | |||||
| 3D Structure |
Method: Homology modeling Teplate PDB: 6AGF_A Sequence Length: 1841 Identity: 91.558% |
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| Click to Save PDB File in TXT Format | |||||
| Performance | Minimized Score | -3071.548 kcal/mol | |||
| Ramachandra Favored |
Medium |
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| QMEANBrane Quality |
Medium |
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| Ramachandran Plot |
Ramz Z Score: -1.38 ± 0.18 Residues in Favored Region: 1769 Ramachandran favored: 96.19% Number of Outliers: 10 Ramachandran outliers: 0.54% |
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Local Quality |
QMEANBrane Score: 0.74 |
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| Click to Save Local Quality Plot in PNG Format | |||||
| Inter-species Structural Differences (ISD) | |||||
| Rattus norvegicus (Rat) | |||||
| Gene Name | Scn4a | ||||
| UniProt ID | |||||
| UniProt Entry | |||||
| 3D Structure |
Method: Homology modeling Teplate PDB: 6AGF_A Sequence Length: 1840 Identity: 91.775% |
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| Click to Save PDB File in TXT Format | |||||
| Performance | Minimized Score | -3186.327 kcal/mol | |||
| Ramachandra Favored |
Medium |
||||
| QMEANBrane Quality |
Medium |
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| Ramachandran Plot |
Ramz Z Score: -1.18 ± 0.19 Residues in Favored Region: 1773 Ramachandran favored: 96.46% Number of Outliers: 11 Ramachandran outliers: 0.60% |
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Local Quality |
QMEANBrane Score: 0.74 |
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| Click to Save Local Quality Plot in PNG Format | |||||
| Experimental Structures of This Model Oganism | |||||
| PDB ID | Scanning Method | Resolution | Expression System | Details | Ref |
| 6MUE | X-ray | 1.9 Å | Escherichia coli | [ 1] | |
| Structure | |||||
| Click to Save PDB File in TXT Format | |||||
| Corresponding chain | B | ||||
| Sequence Length | 1716-1744 | Mutation | No | ||
| 5JR0 | NMR | N.A. | Rattus norvegicus | [ 2] | |
| Structure | |||||
| Click to Save PDB File in TXT Format | |||||
| Corresponding chain | A | ||||
| Sequence Length | 1567-1594 | Mutation | Yes | ||
| Inter-species Structural Differences (ISD) | |||||
| Danio rerio (Zebrafish) | |||||
| Gene Name | scn4ab | ||||
| UniProt ID | |||||
| UniProt Entry | |||||
| 3D Structure |
Method: Homology modeling Teplate PDB: 5XSY_A Sequence Length: 1784 Identity: 60.345% |
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| Click to Save PDB File in TXT Format | |||||
| Performance | Minimized Score | -2903.375 kcal/mol | |||
| Ramachandra Favored |
Medium |
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| QMEANBrane Quality |
Medium |
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| Ramachandran Plot |
Ramz Z Score: -1.56 ± 0.19 Residues in Favored Region: 1703 Ramachandran favored: 95.57% Number of Outliers: 22 Ramachandran outliers: 1.23% |
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Local Quality |
QMEANBrane Score: 0.74 |
||||
| Click to Save Local Quality Plot in PNG Format | |||||
| References | |||||
| 1 | Crystal structures of Ca(2+)-calmodulin bound to Na(V) C-terminal regions suggest role for EF-hand domain in binding and inactivation. Proc Natl Acad Sci U S A. 2019 May 28;116(22):10763-10772. | ||||
| 2 | RCSB PDB: Veratridine binding to a transmembrane segment of mammalian sodium channel Nav1.4 determined by solid-state NMR. | ||||
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