Modelled Stucture
Method: Homology modeling
Teplate PDB: 5GJV_A
Identity: 69.088%
Minimized Score: -2785.464
Detail: Structure Info
Detail Information of Inter-species Structural Difference
| General Information of Drug Transporter (DT) | |||||
|---|---|---|---|---|---|
| DT ID | DTD0534 Transporter Info | ||||
| Gene Name | CACNA1C | ||||
| Protein Name | Voltage-gated calcium channel alpha Cav1.2 | ||||
| Gene ID | |||||
| UniProt ID | |||||
| 3D Structure |
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| Inter-species Structural Differences (ISD) | |||||
| Gallus gallus (Chicken) | |||||
| Gene Name | CACNA1C | ||||
| UniProt ID | |||||
| UniProt Entry | |||||
| 3D Structure |
Method: Homology modeling Teplate PDB: 6JPA_A Sequence Length: 176 Identity: 68.718% |
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| Click to Save PDB File in TXT Format | |||||
| Performance | Minimized Score | -357.131 kcal/mol | |||
| Ramachandra Favored |
Medium |
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| QMEANBrane Quality |
Medium |
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| Ramachandran Plot |
Ramz Z Score: -2.23 ± 0.6 Residues in Favored Region: 167 Ramachandran favored: 95.98% Number of Outliers: 1 Ramachandran outliers: 0.57% |
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Local Quality |
QMEANBrane Score: 0.76 |
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| Click to Save Local Quality Plot in PNG Format | |||||
| Inter-species Structural Differences (ISD) | |||||
| Cavia porcellus (Guinea pig) | |||||
| Gene Name | CACNA1C | ||||
| UniProt ID | |||||
| UniProt Entry | |||||
| 3D Structure |
Method: Homology modeling Teplate PDB: 5GJV_A Sequence Length: 1667 Identity: 69.382% |
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| Click to Save PDB File in TXT Format | |||||
| Performance | Minimized Score | -2795.077 kcal/mol | |||
| Ramachandra Favored |
Poor |
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| QMEANBrane Quality |
Medium |
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| Ramachandran Plot |
Ramz Z Score: -1.91 ± 0.19 Residues in Favored Region: 1567 Ramachandran favored: 94.11% Number of Outliers: 22 Ramachandran outliers: 1.32% |
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Local Quality |
QMEANBrane Score: 0.76 |
||||
| Click to Save Local Quality Plot in PNG Format | |||||
| References | |||||
| 1 | Structural basis of the alpha1-beta subunit interaction of voltage-gated Ca2+ channels. Nature. 2004 Jun 10;429(6992):675-80. | ||||
| 2 | The role of a voltage-dependent Ca2+ channel intracellular linker: a structure-function analysis. J Neurosci. 2012 May 30;32(22):7602-13. | ||||
| 3 | RCSB PDB: apo-Calmodulin Bound to Calcium Voltage Gated Channel 1.2 IQ-Motif. | ||||
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