Detail Information of Mutation-induced Spatial Variation
| General Information of Drug Transporter (DT) | |||||
|---|---|---|---|---|---|
| DT ID | DTD0002 Transporter Info | ||||
| Gene Name | ABCC2 | ||||
| Transporter Name | Multidrug resistance-associated protein 2 | ||||
| Gene ID | |||||
| UniProt ID | |||||
| Mutation-induced Spatial Variation (MSV) of This DT | |||||
| SNP ID | |||||
| Variation Type | V/E | ||||
| Site of GPD | chr10:99836239 (GRCh38.p12) | ||||
| Allele(s) in dbSNP | T>A | ||||
| Minor Allele Frequency | A=0.0373/187 | ||||
| GPD Details | GPD Info | ||||
| Structure Details | |||||
| Modeling Method | Homology modeling | ||||
| Template PDB | 6UY0_A | Identity | 47.93% | ||
| Model Performance | Minimized Score | -3082.145 kcal/mol | |||
| Ramachandra Favored |
Medium |
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| QMEANBrane Quality |
Medium |
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| Ramachandran Plot |
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Ramz Z Score | -1.19 ± 0.19 | ||||
| Residues in Favored Region | 1474 | Percentage of Favorable Residues | 96.66% | ||
| Number of Outliers | 8 | Ramachandran outliers | 0.52% | ||
| Local Quality |
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| Click to Save Local Quality Plot in PNG Format | |||||
| QMEANBrane Score | 0.74 | ||||
| SNP ID | |||||
| Variation Type | V/I | ||||
| Site of GPD | chr10:99804058 (GRCh38.p12) | ||||
| Allele(s) in dbSNP | G>A | ||||
| Minor Allele Frequency | A=0.1865/934 | ||||
| GPD Details | GPD Info | ||||
| Structure Details | |||||
| Modeling Method | Homology modeling | ||||
| Template PDB | 6UY0_A | Identity | 47.865% | ||
| Model Performance | Minimized Score | -3062.903 kcal/mol | |||
| Ramachandra Favored |
Medium |
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| QMEANBrane Quality |
Medium |
||||
| Ramachandran Plot |
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Ramz Z Score | -1.17 ± 0.19 | ||||
| Residues in Favored Region | 1476 | Percentage of Favorable Residues | 96.79% | ||
| Number of Outliers | 13 | Ramachandran outliers | 0.85% | ||
| Local Quality |
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| Click to Save Local Quality Plot in PNG Format | |||||
| QMEANBrane Score | 0.75 | ||||
| SNP ID | |||||
| Variation Type | I/M | ||||
| Site of GPD | chr10:99844450 (GRCh38.p12) | ||||
| Allele(s) in dbSNP | C>G / C>T | ||||
| Minor Allele Frequency | T=0.2881/1443 | ||||
| GPD Details | GPD Info | ||||
| Structure Details | |||||
| Modeling Method | Homology modeling | ||||
| Template PDB | 6UY0_A | Identity | 47.865% | ||
| Model Performance | Minimized Score | -2937.228 kcal/mol | |||
| Ramachandra Favored |
Medium |
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| QMEANBrane Quality |
Medium |
||||
| Ramachandran Plot |
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| Click to Save Ramachandran Plot in PNG Format | |||||
| Ramz Z Score | -1.38 ± 0.19 | ||||
| Residues in Favored Region | 1471 | Percentage of Favorable Residues | 96.46% | ||
| Number of Outliers | 11 | Ramachandran outliers | 0.72% | ||
| Local Quality |
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| Click to Save Local Quality Plot in PNG Format | |||||
| QMEANBrane Score | 0.74 | ||||
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