Detail Information of Mutation-induced Spatial Variation
General Information of Drug Transporter (DT) | |||||
---|---|---|---|---|---|
DT ID | DTD0004 Transporter Info | ||||
Gene Name | ABCG2 | ||||
Transporter Name | Breast cancer resistance protein | ||||
Gene ID | |||||
UniProt ID | |||||
Mutation-induced Spatial Variation (MSV) of This DT | |||||
SNP ID | |||||
Variation Type | L/R | ||||
Site of GPD | chr4:88097526 (GRCh38.p12) | ||||
Allele(s) in dbSNP | A>C | ||||
Minor Allele Frequency | N.A. | ||||
GPD Details | GPD Info | ||||
Structure Details | |||||
Modeling Method | Homology modeling | ||||
Template PDB | 6ETI_A | Identity | 99.847% | ||
Model Performance | Minimized Score | -1698.065 kcal/mol | |||
Ramachandra Favored |
Excellent |
||||
QMEANBrane Quality |
Medium |
||||
Ramachandran Plot | |||||
Click to Save Ramachandran Plot in PNG Format | |||||
Ramz Z Score | -0.58 ± 0.31 | ||||
Residues in Favored Region | 643 | Percentage of Favorable Residues | 98.47% | ||
Number of Outliers | 0 | Ramachandran outliers | 0.00% | ||
Local Quality | |||||
Click to Save Local Quality Plot in PNG Format | |||||
QMEANBrane Score | 0.79 | ||||
PDB ID | Scanning Method | Resolution | Mutation Sites | Details | Ref |
6HBU | EM | 3.09 Å | E211Q | [1] | |
Structure | |||||
Expression System | Homo sapiens | ||||
Corresponding chain | A/B | ||||
Sequence Length | 1-655 | Mutation | Yes | ||
6HCO | EM | 3.58 Å | E211Q | [1] | |
Structure | |||||
Expression System | Homo sapiens,Mus musculus | ||||
Corresponding chain | A/B | ||||
Sequence Length | 2-655 | Mutation | Yes | ||
6HZM | EM | 3.09 Å | E211Q | [1] | |
Structure | |||||
Expression System | Homo sapiens | ||||
Corresponding chain | A/B | ||||
Sequence Length | 1-655 | Mutation | Yes | ||
References | |||||
1 | Cryo-EM structures of a human ABCG2 mutant trapped in ATP-bound and substrate-bound states. Nature. 2018 Nov;563(7731):426-430. | ||||
Pagination
If you find any error in data or bug in web service, please kindly report it to Dr. Yin and Dr. Li.