Detail Information of Transcriptional Regulations

General Information of Drug Transporter (DT)
DT ID DTD0393 Transporter Info
Gene Name SLC52A1
Transporter Name Riboflavin transporter 1
Gene ID
55065
UniProt ID
Q9NWF4

Transcriptional Regulation of This DT (TSR)

TF Superclass 1: Basic domains

      Class 1.1: Basic leucine zipper factors

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        CEBPB 

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       Transcriptional Phenomenon 1

 Direct binding to SLC52A1 gene [1]

TF Protein Name

 CCAAT/enhancer-binding protein beta Transcription Factor Info

Tissue

 Bone

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 CCAAT/enhancer-binding protein beta (CEBPB) can directly bind to the SLC52A1 gene, which in turn affects the expression or function of the drug transporter Riboflavin transporter 1.

      Class 1.2: Basic helix-loop-helix factors

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        MAX 

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       Transcriptional Phenomenon 1

 Direct binding to SLC52A1 gene [2]

TF Protein Name

 Protein max Transcription Factor Info

Tissue

 Bone marrow

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Protein max (MAX) can directly bind to the SLC52A1 gene, which in turn affects the expression or function of the drug transporter Riboflavin transporter 1.

TF Superclass 2: Zinc-coordinating DNA-binding domains

      Class 2.1: Nuclear receptors with C4 zinc fingers

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        HNF4A 

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       Transcriptional Phenomenon 1

 Direct binding to SLC52A1 gene [3]

TF Protein Name

 Hepatocyte nuclear factor 4-alpha Transcription Factor Info

Tissue

 Colon

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Hepatocyte nuclear factor 4-alpha (HNF4A) can directly bind to the SLC52A1 gene, which in turn affects the expression or function of the drug transporter Riboflavin transporter 1.

        NR2F2 

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       Transcriptional Phenomenon 1

 Direct binding to SLC52A1 gene [2]

TF Protein Name

 COUP transcription factor 2 Transcription Factor Info

Tissue

 Breast

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 COUP transcription factor 2 (NR2F2) can directly bind to the SLC52A1 gene, which in turn affects the expression or function of the drug transporter Riboflavin transporter 1.

      Class 2.3: C2H2 zinc finger factors

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        CTCF 

Click to Show/Hide to Show 1 Transcriptional Phenomena      

       Transcriptional Phenomenon 1

 Direct binding to SLC52A1 gene [2]

TF Protein Name

 Transcriptional repressor CTCF Transcription Factor Info

Tissue

 Skin

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Transcriptional repressor CTCF (CTCF) can directly bind to the SLC52A1 gene, which in turn affects the expression or function of the drug transporter Riboflavin transporter 1.

        KLF4 

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       Transcriptional Phenomenon 1

 Direct binding to SLC52A1 gene [4]

TF Protein Name

 Krueppel-like factor 4 Transcription Factor Info

Tissue

 Foreskin

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Krueppel-like factor 4 (KLF4) can directly bind to the SLC52A1 gene, which in turn affects the expression or function of the drug transporter Riboflavin transporter 1.

        MAZ 

Click to Show/Hide to Show 1 Transcriptional Phenomena      

       Transcriptional Phenomenon 1

 Direct binding to SLC52A1 gene [1]

TF Protein Name

 Myc-associated zinc finger protein Transcription Factor Info

Tissue

 Lung

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Myc-associated zinc finger protein (MAZ) can directly bind to the SLC52A1 gene, which in turn affects the expression or function of the drug transporter Riboflavin transporter 1.

        SP1 

Click to Show/Hide to Show 1 Transcriptional Phenomena      

       Transcriptional Phenomenon 1

 Activation of SLC52A1 gene in duodenal adenocarcinoma condition [5]

TF Protein Name

 Transcription factor Sp1 Transcription Factor Info

Studied Phenotype

 Duodenal adenocarcinoma [ICD11: 2B80.00]

Tissue

 Duodenum

Related DT Changes

 Up regulating

Experimental Material

 Human duodenal adenocarcinoma cells (HuTu 80)

Detailed Description

 Transcription factor Sp1 (SP1) has been reported to activate the transcription of SLC52A1 gene in duodenal adenocarcinoma condition, which leads to an increased expression of the drug transporter Riboflavin transporter 1.

        ZNF384 

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       Transcriptional Phenomenon 1

 Direct binding to SLC52A1 gene [3]

TF Protein Name

 Zinc finger protein 384 Transcription Factor Info

Tissue

 Blood; Bone marrow

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Zinc finger protein 384 (ZNF384) can directly bind to the SLC52A1 gene, which in turn affects the expression or function of the drug transporter Riboflavin transporter 1.

TF Superclass 3: Helix-turn-helix domains

      Class 3.5: Tryptophan cluster factors

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        ETS1 

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       Transcriptional Phenomenon 1

 Direct binding to SLC52A1 gene [3]

TF Protein Name

 Protein C-ets-1 Transcription Factor Info

Tissue

 Blood; Bone; Bone marrow; Vein

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Protein C-ets-1 (ETS1) can directly bind to the SLC52A1 gene, which in turn affects the expression or function of the drug transporter Riboflavin transporter 1.

TF Superclass 6: Immunoglobulin fold

      Class 6.4: Runt domain factors

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        RUNX3 

Click to Show/Hide to Show 1 Transcriptional Phenomena      

       Transcriptional Phenomenon 1

 Direct binding to SLC52A1 gene [1]

TF Protein Name

 Runt-related transcription factor 3 Transcription Factor Info

Tissue

 Blood

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Runt-related transcription factor 3 (RUNX3) can directly bind to the SLC52A1 gene, which in turn affects the expression or function of the drug transporter Riboflavin transporter 1.

      Class 6.7: Grainyhead domain factors

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        GRHL3 

Click to Show/Hide to Show 1 Transcriptional Phenomena      

       Transcriptional Phenomenon 1

 Direct binding to SLC52A1 gene [4]

TF Protein Name

 Grainyhead-like protein 3 homolog Transcription Factor Info

Tissue

 Skin

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Grainyhead-like protein 3 homolog (GRHL3) can directly bind to the SLC52A1 gene, which in turn affects the expression or function of the drug transporter Riboflavin transporter 1.
References
1 hTFtarget: A Comprehensive Database for Regulations of Human Transcription Factors and Their Targets. Genomics Proteomics Bioinformatics. 2020 Apr;18(2):120-265. (ID:ENSG00000132517)
2 NCBI GEO: archive for functional genomics data sets--update. Nucleic Acids Res. 2013 Jan;41(D1):D991-5.
3 Closure of the NCBI SRA and implications for the long-term future of genomics data storage. Genome Biol. 2011;12(3):402.
4 The Encyclopedia of DNA elements (ENCODE): data portal update. Nucleic Acids Res. 2018 Jan 4;46(D1):D794-D801
5 Identification and characterization of 5'-flanking region of the human riboflavin transporter 1 gene (SLC52A1). Gene. 2014 Dec 10;553(1):49-56.

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