Detail Information of Transcriptional Regulations

General Information of Drug Transporter (DT)
DT ID DTD0456 Transporter Info
Gene Name SLC6A4
Transporter Name Sodium-dependent serotonin transporter
Gene ID
6532
UniProt ID
P31645

Transcriptional Regulation of This DT (TSR)

TF Superclass 2: Zinc-coordinating DNA-binding domains

      Class 2.2: Other C4 zinc finger-type factors

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        GATA1 

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       Transcriptional Phenomenon 1

 Direct binding to SLC6A4 gene [1]

TF Protein Name

 Erythroid transcription factor Transcription Factor Info

Tissue

 Blood; Bone marrow

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Erythroid transcription factor (GATA1) can directly bind to the SLC6A4 gene, which in turn affects the expression or function of the drug transporter Sodium-dependent serotonin transporter.

      Class 2.3: C2H2 zinc finger factors

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        CTCF 

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       Transcriptional Phenomenon 1

 Activation of SLC6A4 gene in gestational choriocarcinoma condition [2]

TF Protein Name

 Transcriptional repressor CTCF Transcription Factor Info

Studied Phenotype

 Gestational choriocarcinoma [ICD11: 2C75]

Tissue

 Trophoderm

Related DT Changes

 Up regulating

Experimental Material

 Human gestational choriocarcinoma cells (JAr)

Detailed Description

 Transcriptional repressor CTCF (CTCF) has been reported to activate the transcription of SLC6A4 gene in gestational choriocarcinoma condition, which leads to an increased expression of the drug transporter Sodium-dependent serotonin transporter.

TF Superclass 3: Helix-turn-helix domains

      Class 3.5: Tryptophan cluster factors

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        ERG 

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       Transcriptional Phenomenon 1

 Direct binding to SLC6A4 gene [3]

TF Protein Name

 Transcriptional regulator ERG Transcription Factor Info

Tissue

 Aorta

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Transcriptional regulator ERG (ERG) can directly bind to the SLC6A4 gene, which in turn affects the expression or function of the drug transporter Sodium-dependent serotonin transporter.
References
1 NCBI GEO: archive for functional genomics data sets--update. Nucleic Acids Res. 2013 Jan;41(D1):D991-5.
2 Differential regulation of the serotonin transporter gene by lithium is mediated by transcription factors, CCCTC binding protein and Y-box binding protein 1, through the polymorphic intron 2 variable number tandem repeat. J Neurosci. 2007 Mar 14;27(11):2793-801.
3 hTFtarget: A Comprehensive Database for Regulations of Human Transcription Factors and Their Targets. Genomics Proteomics Bioinformatics. 2020 Apr;18(2):120-206. (ID:ENSG00000108576)

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