General Information of Drug Transporter (DT)
DT ID DTD0003 Transporter Info
Gene Name ABCB1
Transporter Name P-glycoprotein 1
Gene ID
5243
UniProt ID
P08183
Mutation-induced Spatial Variation (MSV) of This DT
Click to Save PDB File in TXT Format
SNP ID
rs2229109
Variation Type S/N
Site of GPD chr7:87550493 (GRCh38.p12)
Allele(s) in dbSNP C>A / C>T
Minor Allele Frequency T=0.0126/63
GPD Details GPD Info
Structure Details
Click to Show/Hide the Details
Modeling Method Homology modeling
Template PDB 6QEX_A Identity 99.844%
Model Performance Minimized Score -3300.347 kcal/mol
Ramachandra Favored

Medium

QMEANBrane Quality

High

Ramachandran Plot
Click to Save Ramachandran Plot in PNG Format
Ramz Z Score -0.71 ± 0.21
Residues in Favored Region 1251 Percentage of Favorable Residues 97.89%
Number of Outliers 3 Ramachandran outliers 0.23%
Local Quality
Click to Save Local Quality Plot in PNG Format
QMEANBrane Score 0.8
Click to Save PDB File in TXT Format
SNP ID
rs9282564
Variation Type N/D
Site of GPD chr7:87600124 (GRCh38.p12)
Allele(s) in dbSNP T>A / T>C / T>G
Minor Allele Frequency C=0.0260/130
GPD Details GPD Info
Structure Details
Click to Show/Hide the Details
Modeling Method Homology modeling
Template PDB 6QEX_A Identity 99.844%
Model Performance Minimized Score -3299.418 kcal/mol
Ramachandra Favored

Medium

QMEANBrane Quality

High

Ramachandran Plot
Click to Save Ramachandran Plot in PNG Format
Ramz Z Score -0.42 ± 0.21
Residues in Favored Region 1252 Percentage of Favorable Residues 97.97%
Number of Outliers 3 Ramachandran outliers 0.23%
Local Quality
Click to Save Local Quality Plot in PNG Format
QMEANBrane Score 0.8
Click to Save PDB File in TXT Format
SNP ID
rs9282564
Variation Type N/H
Site of GPD chr7:87600124 (GRCh38.p12)
Allele(s) in dbSNP T>A / T>C / T>G
Minor Allele Frequency C=0.0260/130
GPD Details GPD Info
Structure Details
Click to Show/Hide the Details
Modeling Method Homology modeling
Template PDB 6QEX_A Identity 99.844%
Model Performance Minimized Score -3260.55 kcal/mol
Ramachandra Favored

Medium

QMEANBrane Quality

High

Ramachandran Plot
Click to Save Ramachandran Plot in PNG Format
Ramz Z Score -0.69 ± 0.21
Residues in Favored Region 1250 Percentage of Favorable Residues 97.81%
Number of Outliers 5 Ramachandran outliers 0.39%
Local Quality
Click to Save Local Quality Plot in PNG Format
QMEANBrane Score 0.8
Experimental Structures Related to This MSV
PDB ID Scanning Method Resolution Mutation Sites Details Ref
6C0V EM 3.4 Å E556Q; E1201Q
Show Detail
[1]
Structure
Expression System Homo sapiens
Corresponding chain A
Sequence Length 1-1280 Mutation Yes
6QEX EM 3.6 Å S893A
Show Detail
[2]
Structure
Expression System Homo sapiens
Corresponding chain A
Sequence Length 1-1280 Mutation Yes
7A65 EM 3.9 Å S893A
Show Detail
[3]
Structure
Expression System Homo sapiens
Corresponding chain A
Sequence Length 1-1280 Mutation Yes
7A69 EM 3.2 Å S893A
Show Detail
[3]
Structure
Expression System Homo sapiens
Corresponding chain A
Sequence Length 1-1280 Mutation Yes
7A6C EM 3.6 Å S893A
Show Detail
[3]
Structure
Expression System Homo sapiens
Corresponding chain A
Sequence Length 1-1280 Mutation Yes
7A6E EM 3.6 Å S893A
Show Detail
[3]
Structure
Expression System Homo sapiens
Corresponding chain A
Sequence Length 1-1280 Mutation Yes
7A6F EM 3.5 Å S893A
Show Detail
[3]
Structure
Expression System Homo sapiens
Corresponding chain A
Sequence Length 1-1280 Mutation Yes
References
1 Molecular structure of human P-glycoprotein in the ATP-bound, outward-facing conformation. Science. 2018 Feb 23;359(6378):915-919.
2 Structural insight into substrate and inhibitor discrimination by human P-glycoprotein. Science. 2019 Feb 15;363(6428):753-756.
3 Cryo-EM structures reveal distinct mechanisms of inhibition of the human multidrug transporter ABCB1. Proc Natl Acad Sci U S A. 2020 Oct 20;117(42):26245-26253.

If you find any error in data or bug in web service, please kindly report it to Dr. Yin and Dr. Li.