Detail Information of Transcriptional Regulations

General Information of Drug Transporter (DT)
DT ID DTD0445 Transporter Info
Gene Name SLC6A13
Transporter Name Sodium- and chloride-dependent GABA transporter 2
Gene ID
6540
UniProt ID
Q9NSD5

Transcriptional Regulation of This DT (TSR)

TF Superclass 1: Basic domains

      Class 1.2: Basic helix-loop-helix factors

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        ASCL1 

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       Transcriptional Phenomenon 1

 Activation of SLC6A13 gene in hepatocellular carcinoma condition [1]

TF Protein Name

 Achaete-scute homolog 1 Transcription Factor Info

Studied Phenotype

 Hepatocellular carcinoma [ICD11: 2C12.02]

Tissue

 Liver

Related DT Changes

 Up regulating

Experimental Material

 Human adult hepatocellular carcinoma cells (Huh7)

Detailed Description

 Achaete-scute homolog 1 (ASCL1) has been reported to activate the transcription of SLC6A13 gene in hepatocellular carcinoma condition, which leads to an increased expression of the drug transporter sodium- and chlorine-dependent GABA transporter 2.

      Class 1.3: Basic helix-span-helix factors

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        TFAP2C 

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       Transcriptional Phenomenon 1

 Direct binding to SLC6A13 gene [2]

TF Protein Name

 Transcription factor AP-2 gamma Transcription Factor Info

Tissue

 Breast

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Transcription factor AP-2 gamma (TFAP2C) can directly bind to the SLC6A13 gene, which in turn affects the expression or function of the drug transporter Sodium- and chloride-dependent GABA transporter 2.

TF Superclass 2: Zinc-coordinating DNA-binding domains

      Class 2.1: Nuclear receptors with C4 zinc fingers

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        NR2F2 

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       Transcriptional Phenomenon 1

 Direct binding to SLC6A13 gene [2]

TF Protein Name

 COUP transcription factor 2 Transcription Factor Info

Tissue

 Breast

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 COUP transcription factor 2 (NR2F2) can directly bind to the SLC6A13 gene, which in turn affects the expression or function of the drug transporter Sodium- and chloride-dependent GABA transporter 2.

      Class 2.2: Other C4 zinc finger-type factors

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        GATA1 

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       Transcriptional Phenomenon 1

 Direct binding to SLC6A13 gene [3]

TF Protein Name

 Erythroid transcription factor Transcription Factor Info

Tissue

 Blood; Bone marrow

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Erythroid transcription factor (GATA1) can directly bind to the SLC6A13 gene, which in turn affects the expression or function of the drug transporter Sodium- and chloride-dependent GABA transporter 2.

      Class 2.3: C2H2 zinc finger factors

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        CTCF 

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       Transcriptional Phenomenon 1

 Direct binding to SLC6A13 gene [2]

TF Protein Name

 Transcriptional repressor CTCF Transcription Factor Info

Tissue

 Blood; Bone marrow; Cervix; Colon; Embryo; Epithelium; Liver

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Transcriptional repressor CTCF (CTCF) can directly bind to the SLC6A13 gene, which in turn affects the expression or function of the drug transporter Sodium- and chloride-dependent GABA transporter 2.

        KLF9 

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       Transcriptional Phenomenon 1

 Direct binding to SLC6A13 gene [4]

TF Protein Name

 Krueppel-like factor 9 Transcription Factor Info

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Krueppel-like factor 9 (KLF9) can directly bind to the SLC6A13 gene, which in turn affects the expression or function of the drug transporter Sodium- and chloride-dependent GABA transporter 2.

        MAZ 

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       Transcriptional Phenomenon 1

 Direct binding to SLC6A13 gene [5]

TF Protein Name

 Myc-associated zinc finger protein Transcription Factor Info

Tissue

 Blood; Bone marrow; Liver; Lung

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Myc-associated zinc finger protein (MAZ) can directly bind to the SLC6A13 gene, which in turn affects the expression or function of the drug transporter Sodium- and chloride-dependent GABA transporter 2.

        ZBTB7A 

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       Transcriptional Phenomenon 1

 Direct binding to SLC6A13 gene [4]

TF Protein Name

 Zinc finger and BTB domain-containing protein 7A Transcription Factor Info

Tissue

 Uterus

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Zinc finger and BTB domain-containing protein 7A (ZBTB7A) can directly bind to the SLC6A13 gene, which in turn affects the expression or function of the drug transporter Sodium- and chloride-dependent GABA transporter 2.

        ZNF263 

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       Transcriptional Phenomenon 1

 Direct binding to SLC6A13 gene [3]

TF Protein Name

 Zinc finger protein 263 Transcription Factor Info

Tissue

 Kidney

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Zinc finger protein 263 (ZNF263) can directly bind to the SLC6A13 gene, which in turn affects the expression or function of the drug transporter Sodium- and chloride-dependent GABA transporter 2.

TF Superclass 3: Helix-turn-helix domains

      Class 3.1: Homeo domain factors

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        HNF1B 

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       Transcriptional Phenomenon 1

 Activation of SLC6A13 gene in renal cysts condition [6]

TF Protein Name

 Hepatocyte nuclear factor 1-beta Transcription Factor Info

Studied Phenotype

 Renal cysts [ICD11: GB80]

Tissue

 Kidney

Related DT Changes

 Up regulating

Experimental Material

 Zebrafish TgPT::EGFP)

Detailed Description

 Hepatocyte nuclear factor 1-beta (HNF1B) has been reported to activate the transcription of SLC6A13 gene in renal cysts condition, which leads to an increased expression of the drug transporter Sodium- and chloride-dependent GABA transporter 2.

      Class 3.3: Fork head / winged helix factors

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        E2F6 

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       Transcriptional Phenomenon 1

 Direct binding to SLC6A13 gene [3]

TF Protein Name

 Transcription factor E2F6 Transcription Factor Info

Tissue

 Embryo

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Transcription factor E2F6 (E2F6) can directly bind to the SLC6A13 gene, which in turn affects the expression or function of the drug transporter Sodium- and chloride-dependent GABA transporter 2.

        FOXA2 

Click to Show/Hide to Show 1 Transcriptional Phenomena      

       Transcriptional Phenomenon 1

 Direct binding to SLC6A13 gene [5]

TF Protein Name

 Hepatocyte nuclear factor 3-beta Transcription Factor Info

Tissue

 Embryo; Liver; Skin

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Hepatocyte nuclear factor 3-beta (FOXA2) can directly bind to the SLC6A13 gene, which in turn affects the expression or function of the drug transporter Sodium- and chloride-dependent GABA transporter 2.

      Class 3.5: Tryptophan cluster factors

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        SPI1 

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       Transcriptional Phenomenon 1

 Direct binding to SLC6A13 gene [4]

TF Protein Name

 Transcription factor PU.1 Transcription Factor Info

Tissue

 Blood; Brain; Embryo; Foreskin; Heart; Intestine; Kidney; Lung; Muscle; Penis; Renal cortex; Renal pelvis; Skin; Spinal cord; Stomach; Testes; Umbilical cord blood

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Transcription factor PU.1 (SPI1) can directly bind to the SLC6A13 gene, which in turn affects the expression or function of the drug transporter Sodium- and chloride-dependent GABA transporter 2.

TF Superclass 5: alpha-Helices exposed by beta-structures

      Class 5.1: MADS box factors

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        SRF 

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       Transcriptional Phenomenon 1

 Direct binding to SLC6A13 gene [4]

TF Protein Name

 Serum response factor Transcription Factor Info

Tissue

 Embryo

Related DT Changes

 Direct regulating

Experiment method

 TF-transporter regulations were collected from ChIP-Seq datasets.

Detailed Description

 Serum response factor (SRF) can directly bind to the SLC6A13 gene, which in turn affects the expression or function of the drug transporter Sodium- and chloride-dependent GABA transporter 2.
References
1 Bioinformatics Analysis Identifies ASCL1 as the Key Transcription Factor in Hepatocellular Carcinoma Progression. Dis Markers. 2023 Jan 30;2023:3560340.
2 NCBI GEO: archive for functional genomics data sets--update. Nucleic Acids Res. 2013 Jan;41(D1):D991-5.
3 Closure of the NCBI SRA and implications for the long-term future of genomics data storage. Genome Biol. 2011;12(3):402.
4 hTFtarget: A Comprehensive Database for Regulations of Human Transcription Factors and Their Targets. Genomics Proteomics Bioinformatics. 2020 Apr;18(2):120-138. (ID:ENSG00000010379)
5 The Encyclopedia of DNA elements (ENCODE): data portal update. Nucleic Acids Res. 2018 Jan 4;46(D1):D794-D801
6 Transcriptional profiling of the zebrafish proximal tubule. Am J Physiol Renal Physiol. 2019 Aug 1;317(2):F478-F488.

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